TnSeqCorr

Top 10 genes with highest correlation to Rv3405c/-:

update plotcorrelationlink to info on gene
Rv0249c/- (cc=0.496) info on Rv0249c/-
Rv0248c/- (cc=0.4672) info on Rv0248c/-
Rv0886/fprB (cc=0.4652) info on Rv0886/fprB
Rv0840c/pip (cc=0.4585) info on Rv0840c/pip
Rv3641c/fic (cc=0.4573) info on Rv3641c/fic
Rv2613c/- (cc=0.454) info on Rv2613c/-
Rv1367c/- (cc=0.4534) info on Rv1367c/-
Rv0758/phoR (cc=0.4442) info on Rv0758/phoR
Rv1056/- (cc=0.4393) info on Rv1056/-
Rv2175c/- (cc=0.4367) info on Rv2175c/-

Correlation of Rv3405c/- with Rv0840c/pip

Normalized LFCs for Rv3405c/-:
(description and provenance of datasets)
Rv3405c/-Rv0840c/pip
Fe_supp_jason_reseq

0.497

0.188

low_pH_jason_reseq

-0.348

-0.179

NO_jason_reseq

-0.654

-0.11

B6_jason_reseq

-0.699

0.235

MHCII_jason_reseq

1.019

1.249

Isoniazid02

-0.528

1.206

Rifampicin4

0.268

-0.014

Ethambutol3

0.136

1.4

Meropenem3

0.403

0.355

Vancomycin16

-0.117

-0.305

Rv2680_day32

-0.947

0.455

H37Rv_KO_MarP

1.319

0.567

hypoxia_3wks

-0.323

-0.311

hypoxia_6wks

-1.14

-0.163

glycerol

-0.527

-0.829

cholesterol

-0.852

-0.447

AJ

-0.716

-0.363

Bibs02

-1.281

0.172

Bibs02c

0.285

0.8

BL6

0.13

-0.557

BL6a

-0.099

0.017

BXD01

-0.133

-0.899

BXD010

-0.276

-0.973

BXD011

-1.236

-0.923

BXD03

0.0

-0.402

BXD04

0.156

-0.779

BXD05

-1.578

-1.08

BXD06

-0.434

-1.231

BXD07

-0.361

-1.201

BXD08

-0.5

-0.659

BXD09

-1.018

-0.39

CAST

-0.674

-0.095

CCcont

0.0

-0.209

DS01

0.76

0.72

DS02

0.718

0.194

DS04

0.306

0.921

DS0c

0.866

0.676

GP01

0.394

-0.938

GP02

-0.71

-0.244

GP0c

-0.3

-0.562

NOD

-1.627

0.254

NZO

-0.52

-0.444

PWK

-0.807

-0.865

H37Rv_KO_CtpC

-0.424

-1.366

H37Rv_KO_CtpD

-0.254

-0.08

H37Rv_KO_Rv1272

-0.125

-0.239

H37Rv_KO_SugABC

0.996

-0.256

H37Rv_KO_MbtN

0.721

0.202

Trans05

-0.15

-0.559

macrophage_unactivated

-0.117

-0.379

IL1

-0.694

-1.267

Rapamycin

-0.654

-0.638

Tcell

-0.762

-0.984

GMCSF

-0.454

-0.082

IFNab

-0.399

-0.846

IFNg

-1.97

-0.708

IFNg_GMCSF1

-0.606

-0.44

Rv1432_day32

-0.188

-0.501

Rv1565c_day32

2.303

0.951

secA2_input

0.581

-0.077

delta_Rv3594

-0.45

-0.627

delta_Rv3717

-0.769

-0.753

delta_Rv3811

0.207

-0.706

delta_Rv0954

-0.642

-0.136

PonA1

-1.003

-0.274

EccD1_KO

1.342

1.089

EspI_KO

1.497

1.286

PE35_KO

1.123

0.665

PPE68_KO

0.448

0.784

glycerol2

1.092

0.031

lignocerate

0.855

-0.013

oleate

2.718

-0.04

phosphatidylcholine

1.144

0.113

acetate

-0.073

-0.254

glucAc

-0.378

0.045

Rv0950ko

-0.124

0.431

Rv1096ko

-0.253

0.22

Rv3684ko

-1.336

-0.36

delta_otsA_trehalose

-1.06

1.128