Top 10 genes with highest correlation to Rv3405c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0249c/- | (cc=0.496) | info on Rv0249c/- |
| Rv0248c/- | (cc=0.4672) | info on Rv0248c/- |
| Rv0886/fprB | (cc=0.4652) | info on Rv0886/fprB |
| Rv0840c/pip | (cc=0.4585) | info on Rv0840c/pip |
| Rv3641c/fic | (cc=0.4573) | info on Rv3641c/fic |
| Rv2613c/- | (cc=0.454) | info on Rv2613c/- |
| Rv1367c/- | (cc=0.4534) | info on Rv1367c/- |
| Rv0758/phoR | (cc=0.4442) | info on Rv0758/phoR |
| Rv1056/- | (cc=0.4393) | info on Rv1056/- |
| Rv2175c/- | (cc=0.4367) | info on Rv2175c/- |
Correlation of Rv3405c/- with Rv1056/-
Normalized LFCs for Rv3405c/-:
(description and provenance of datasets)
| Rv3405c/- | Rv1056/- | |
| Fe_supp_jason_reseq | 0.497 | -0.448 |
| low_pH_jason_reseq | -0.348 | -0.36 |
| NO_jason_reseq | -0.654 | 0.06 |
| B6_jason_reseq | -0.699 | 0.026 |
| MHCII_jason_reseq | 1.019 | 0.501 |
| Isoniazid02 | -0.528 | 1.148 |
| Rifampicin4 | 0.268 | -0.246 |
| Ethambutol3 | 0.136 | -0.136 |
| Meropenem3 | 0.403 | 0.567 |
| Vancomycin16 | -0.117 | -0.313 |
| Rv2680_day32 | -0.947 | -0.226 |
| H37Rv_KO_MarP | 1.319 | 0.861 |
| hypoxia_3wks | -0.323 | -0.447 |
| hypoxia_6wks | -1.14 | -0.173 |
| glycerol | -0.527 | -0.465 |
| cholesterol | -0.852 | -0.341 |
| AJ | -0.716 | 0.348 |
| Bibs02 | -1.281 | -0.619 |
| Bibs02c | 0.285 | 0.035 |
| BL6 | 0.13 | 0.031 |
| BL6a | -0.099 | -0.253 |
| BXD01 | -0.133 | -0.361 |
| BXD010 | -0.276 | -0.308 |
| BXD011 | -1.236 | -0.204 |
| BXD03 | 0.0 | -0.473 |
| BXD04 | 0.156 | -0.537 |
| BXD05 | -1.578 | -0.068 |
| BXD06 | -0.434 | -0.274 |
| BXD07 | -0.361 | 0.006 |
| BXD08 | -0.5 | 0.18 |
| BXD09 | -1.018 | -0.383 |
| CAST | -0.674 | 0.047 |
| CCcont | 0.0 | -0.225 |
| DS01 | 0.76 | 0.421 |
| DS02 | 0.718 | 0.789 |
| DS04 | 0.306 | 0.332 |
| DS0c | 0.866 | 0.13 |
| GP01 | 0.394 | 0.012 |
| GP02 | -0.71 | 0.403 |
| GP0c | -0.3 | -1.404 |
| NOD | -1.627 | -0.01 |
| NZO | -0.52 | 0.056 |
| PWK | -0.807 | -0.566 |
| H37Rv_KO_CtpC | -0.424 | 0.441 |
| H37Rv_KO_CtpD | -0.254 | -0.092 |
| H37Rv_KO_Rv1272 | -0.125 | 0.261 |
| H37Rv_KO_SugABC | 0.996 | 1.086 |
| H37Rv_KO_MbtN | 0.721 | 0.494 |
| Trans05 | -0.15 | 0.367 |
| macrophage_unactivated | -0.117 | -0.11 |
| IL1 | -0.694 | 0.021 |
| Rapamycin | -0.654 | -0.648 |
| Tcell | -0.762 | 0.222 |
| GMCSF | -0.454 | -0.515 |
| IFNab | -0.399 | -0.686 |
| IFNg | -1.97 | -0.673 |
| IFNg_GMCSF1 | -0.606 | -0.415 |
| Rv1432_day32 | -0.188 | 0.305 |
| Rv1565c_day32 | 2.303 | 0.046 |
| secA2_input | 0.581 | -0.982 |
| delta_Rv3594 | -0.45 | -0.052 |
| delta_Rv3717 | -0.769 | -0.186 |
| delta_Rv3811 | 0.207 | -0.277 |
| delta_Rv0954 | -0.642 | -0.252 |
| PonA1 | -1.003 | 0.383 |
| EccD1_KO | 1.342 | 0.303 |
| EspI_KO | 1.497 | 0.684 |
| PE35_KO | 1.123 | 0.583 |
| PPE68_KO | 0.448 | 0.528 |
| glycerol2 | 1.092 | 0.517 |
| lignocerate | 0.855 | 0.704 |
| oleate | 2.718 | 0.383 |
| phosphatidylcholine | 1.144 | 0.718 |
| acetate | -0.073 | 0.023 |
| glucAc | -0.378 | 0.17 |
| Rv0950ko | -0.124 | 0.054 |
| Rv1096ko | -0.253 | 0.072 |
| Rv3684ko | -1.336 | -0.226 |
| delta_otsA_trehalose | -1.06 | 0.244 |