Top 10 genes with highest correlation to Rv3340/metC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0173/lprK | (cc=0.5486) | info on Rv0173/lprK |
| Rv0199/- | (cc=0.4879) | info on Rv0199/- |
| Rv3543c/fadE29 | (cc=0.4814) | info on Rv3543c/fadE29 |
| Rv2857c/- | (cc=0.4749) | info on Rv2857c/- |
| Rv2427c/proA | (cc=0.4747) | info on Rv2427c/proA |
| Rv0655/mkl | (cc=0.4705) | info on Rv0655/mkl |
| Rv0170/mce1B | (cc=0.47) | info on Rv0170/mce1B |
| Rv3723/- | (cc=0.458) | info on Rv3723/- |
| Rv0169/mce1A | (cc=0.4462) | info on Rv0169/mce1A |
| Rv3560c/fadE30 | (cc=0.4437) | info on Rv3560c/fadE30 |
Correlation of Rv3340/metC with Rv3723/-
Normalized LFCs for Rv3340/metC:
(description and provenance of datasets)
| Rv3340/metC | Rv3723/- | |
| Fe_supp_jason_reseq | -0.849 | 0.095 |
| low_pH_jason_reseq | 0.333 | 0.552 |
| NO_jason_reseq | 1.557 | 3.069 |
| B6_jason_reseq | -0.935 | -1.244 |
| MHCII_jason_reseq | -2.179 | -3.307 |
| Isoniazid02 | 1.676 | 0.681 |
| Rifampicin4 | 0.279 | 2.115 |
| Ethambutol3 | 0.505 | 1.358 |
| Meropenem3 | 0.722 | 0.848 |
| Vancomycin16 | 1.87 | 2.141 |
| Rv2680_day32 | 0.642 | -1.465 |
| H37Rv_KO_MarP | 1.266 | 0.988 |
| hypoxia_3wks | 0.622 | 2.357 |
| hypoxia_6wks | -1.265 | 2.307 |
| glycerol | 0.832 | -1.211 |
| cholesterol | -0.91 | -1.176 |
| AJ | -0.832 | -4.488 |
| Bibs02 | -1.813 | -2.942 |
| Bibs02c | -1.901 | -3.569 |
| BL6 | -0.133 | -1.308 |
| BL6a | -0.445 | -2.581 |
| BXD01 | -0.292 | -1.279 |
| BXD010 | 1.35 | -1.549 |
| BXD011 | -0.583 | -0.563 |
| BXD03 | -1.026 | -1.11 |
| BXD04 | 0.668 | -1.306 |
| BXD05 | -0.046 | -1.336 |
| BXD06 | -0.838 | -1.897 |
| BXD07 | 0.295 | -1.212 |
| BXD08 | 1.247 | -1.151 |
| BXD09 | 0.337 | -1.812 |
| CAST | 0.292 | -3.001 |
| CCcont | -0.104 | -0.455 |
| DS01 | -2.342 | -3.213 |
| DS02 | -0.78 | -2.445 |
| DS04 | -1.924 | -2.45 |
| DS0c | -2.349 | -2.49 |
| GP01 | -0.222 | -1.287 |
| GP02 | -0.825 | -1.403 |
| GP0c | 0.754 | -0.214 |
| NOD | 0.0 | 0.239 |
| NZO | -1.253 | -4.017 |
| PWK | -0.209 | -3.794 |
| H37Rv_KO_CtpC | -1.611 | -1.68 |
| H37Rv_KO_CtpD | -0.961 | -1.206 |
| H37Rv_KO_Rv1272 | -0.317 | -0.759 |
| H37Rv_KO_SugABC | -1.171 | 1.375 |
| H37Rv_KO_MbtN | 0.617 | 0.178 |
| Trans05 | -0.408 | -0.643 |
| macrophage_unactivated | -0.66 | -1.616 |
| IL1 | -0.237 | 1.762 |
| Rapamycin | -0.506 | 1.053 |
| Tcell | 0.0 | -1.522 |
| GMCSF | -0.106 | -0.465 |
| IFNab | -0.242 | -1.599 |
| IFNg | -0.559 | 0.184 |
| IFNg_GMCSF1 | -0.657 | -1.043 |
| Rv1432_day32 | -2.596 | -1.747 |
| Rv1565c_day32 | -2.426 | -3.15 |
| secA2_input | 1.429 | 0.642 |
| delta_Rv3594 | -1.111 | -0.366 |
| delta_Rv3717 | 0.083 | 0.01 |
| delta_Rv3811 | -0.568 | -0.369 |
| delta_Rv0954 | -0.938 | 0.302 |
| PonA1 | 0.184 | -0.467 |
| EccD1_KO | -1.033 | 0.243 |
| EspI_KO | -1.243 | 0.488 |
| PE35_KO | -1.033 | -0.604 |
| PPE68_KO | -0.646 | -0.013 |
| glycerol2 | -0.451 | -1.289 |
| lignocerate | -1.74 | -0.939 |
| oleate | -0.457 | 0.634 |
| phosphatidylcholine | -1.581 | -0.832 |
| acetate | -1.342 | 0.698 |
| glucAc | -1.726 | 0.315 |
| Rv0950ko | 0.793 | 0.455 |
| Rv1096ko | 1.188 | 0.039 |
| Rv3684ko | 1.392 | -0.072 |
| delta_otsA_trehalose | -0.079 | -1.01 |