Top 10 genes with highest correlation to Rv3340/metC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0173/lprK | (cc=0.5486) | info on Rv0173/lprK |
| Rv0199/- | (cc=0.4879) | info on Rv0199/- |
| Rv3543c/fadE29 | (cc=0.4814) | info on Rv3543c/fadE29 |
| Rv2857c/- | (cc=0.4749) | info on Rv2857c/- |
| Rv2427c/proA | (cc=0.4747) | info on Rv2427c/proA |
| Rv0655/mkl | (cc=0.4705) | info on Rv0655/mkl |
| Rv0170/mce1B | (cc=0.47) | info on Rv0170/mce1B |
| Rv3723/- | (cc=0.458) | info on Rv3723/- |
| Rv0169/mce1A | (cc=0.4462) | info on Rv0169/mce1A |
| Rv3560c/fadE30 | (cc=0.4437) | info on Rv3560c/fadE30 |
Correlation of Rv3340/metC with Rv3543c/fadE29
Normalized LFCs for Rv3340/metC:
(description and provenance of datasets)
| Rv3340/metC | Rv3543c/fadE29 | |
| Fe_supp_jason_reseq | -0.849 | -0.063 |
| low_pH_jason_reseq | 0.333 | 1.8 |
| NO_jason_reseq | 1.557 | 0.656 |
| B6_jason_reseq | -0.935 | -2.095 |
| MHCII_jason_reseq | -2.179 | -1.587 |
| Isoniazid02 | 1.676 | 0.0 |
| Rifampicin4 | 0.279 | 0.374 |
| Ethambutol3 | 0.505 | -0.285 |
| Meropenem3 | 0.722 | 0.125 |
| Vancomycin16 | 1.87 | 0.698 |
| Rv2680_day32 | 0.642 | -0.947 |
| H37Rv_KO_MarP | 1.266 | 0.467 |
| hypoxia_3wks | 0.622 | 0.57 |
| hypoxia_6wks | -1.265 | 0.299 |
| glycerol | 0.832 | 0.607 |
| cholesterol | -0.91 | -1.123 |
| AJ | -0.832 | -1.798 |
| Bibs02 | -1.813 | -1.417 |
| Bibs02c | -1.901 | -1.622 |
| BL6 | -0.133 | -0.53 |
| BL6a | -0.445 | -1.535 |
| BXD01 | -0.292 | -0.653 |
| BXD010 | 1.35 | 0.0 |
| BXD011 | -0.583 | -0.362 |
| BXD03 | -1.026 | -0.79 |
| BXD04 | 0.668 | 2.08 |
| BXD05 | -0.046 | -0.57 |
| BXD06 | -0.838 | -0.902 |
| BXD07 | 0.295 | 0.0 |
| BXD08 | 1.247 | -0.667 |
| BXD09 | 0.337 | -0.95 |
| CAST | 0.292 | -1.785 |
| CCcont | -0.104 | 1.223 |
| DS01 | -2.342 | -1.831 |
| DS02 | -0.78 | -1.686 |
| DS04 | -1.924 | -1.311 |
| DS0c | -2.349 | -1.681 |
| GP01 | -0.222 | -0.765 |
| GP02 | -0.825 | -0.645 |
| GP0c | 0.754 | -0.209 |
| NOD | 0.0 | -1.741 |
| NZO | -1.253 | -1.546 |
| PWK | -0.209 | -1.52 |
| H37Rv_KO_CtpC | -1.611 | -1.098 |
| H37Rv_KO_CtpD | -0.961 | -0.537 |
| H37Rv_KO_Rv1272 | -0.317 | -0.824 |
| H37Rv_KO_SugABC | -1.171 | -0.768 |
| H37Rv_KO_MbtN | 0.617 | -0.052 |
| Trans05 | -0.408 | -0.066 |
| macrophage_unactivated | -0.66 | -0.126 |
| IL1 | -0.237 | 0.742 |
| Rapamycin | -0.506 | 1.332 |
| Tcell | 0.0 | -3.389 |
| GMCSF | -0.106 | 0.201 |
| IFNab | -0.242 | 3.196 |
| IFNg | -0.559 | 0.299 |
| IFNg_GMCSF1 | -0.657 | 0.682 |
| Rv1432_day32 | -2.596 | -1.868 |
| Rv1565c_day32 | -2.426 | -0.599 |
| secA2_input | 1.429 | 1.614 |
| delta_Rv3594 | -1.111 | -0.271 |
| delta_Rv3717 | 0.083 | -0.999 |
| delta_Rv3811 | -0.568 | -1.252 |
| delta_Rv0954 | -0.938 | -0.311 |
| PonA1 | 0.184 | 0.182 |
| EccD1_KO | -1.033 | -0.194 |
| EspI_KO | -1.243 | 0.465 |
| PE35_KO | -1.033 | 1.534 |
| PPE68_KO | -0.646 | 0.355 |
| glycerol2 | -0.451 | -0.706 |
| lignocerate | -1.74 | -1.025 |
| oleate | -0.457 | -0.276 |
| phosphatidylcholine | -1.581 | -1.297 |
| acetate | -1.342 | -1.062 |
| glucAc | -1.726 | -1.29 |
| Rv0950ko | 0.793 | 1.803 |
| Rv1096ko | 1.188 | 1.644 |
| Rv3684ko | 1.392 | 0.367 |
| delta_otsA_trehalose | -0.079 | -1.048 |