Top 10 genes with highest correlation to Rv3340/metC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0173/lprK | (cc=0.5486) | info on Rv0173/lprK |
| Rv0199/- | (cc=0.4879) | info on Rv0199/- |
| Rv3543c/fadE29 | (cc=0.4814) | info on Rv3543c/fadE29 |
| Rv2857c/- | (cc=0.4749) | info on Rv2857c/- |
| Rv2427c/proA | (cc=0.4747) | info on Rv2427c/proA |
| Rv0655/mkl | (cc=0.4705) | info on Rv0655/mkl |
| Rv0170/mce1B | (cc=0.47) | info on Rv0170/mce1B |
| Rv3723/- | (cc=0.458) | info on Rv3723/- |
| Rv0169/mce1A | (cc=0.4462) | info on Rv0169/mce1A |
| Rv3560c/fadE30 | (cc=0.4437) | info on Rv3560c/fadE30 |
Correlation of Rv3340/metC with Rv0199/-
Normalized LFCs for Rv3340/metC:
(description and provenance of datasets)
| Rv3340/metC | Rv0199/- | |
| Fe_supp_jason_reseq | -0.849 | 0.841 |
| low_pH_jason_reseq | 0.333 | 0.723 |
| NO_jason_reseq | 1.557 | 1.762 |
| B6_jason_reseq | -0.935 | -1.774 |
| MHCII_jason_reseq | -2.179 | -2.46 |
| Isoniazid02 | 1.676 | -0.226 |
| Rifampicin4 | 0.279 | 1.449 |
| Ethambutol3 | 0.505 | -0.641 |
| Meropenem3 | 0.722 | 1.031 |
| Vancomycin16 | 1.87 | 1.828 |
| Rv2680_day32 | 0.642 | -3.021 |
| H37Rv_KO_MarP | 1.266 | 1.243 |
| hypoxia_3wks | 0.622 | 2.528 |
| hypoxia_6wks | -1.265 | 2.99 |
| glycerol | 0.832 | -0.607 |
| cholesterol | -0.91 | -1.345 |
| AJ | -0.832 | -4.548 |
| Bibs02 | -1.813 | -4.036 |
| Bibs02c | -1.901 | -5.106 |
| BL6 | -0.133 | -0.391 |
| BL6a | -0.445 | -2.937 |
| BXD01 | -0.292 | -1.034 |
| BXD010 | 1.35 | -0.765 |
| BXD011 | -0.583 | -0.234 |
| BXD03 | -1.026 | -0.87 |
| BXD04 | 0.668 | -1.369 |
| BXD05 | -0.046 | -0.804 |
| BXD06 | -0.838 | -0.88 |
| BXD07 | 0.295 | 0.112 |
| BXD08 | 1.247 | -0.525 |
| BXD09 | 0.337 | -1.066 |
| CAST | 0.292 | -2.785 |
| CCcont | -0.104 | -0.275 |
| DS01 | -2.342 | -3.673 |
| DS02 | -0.78 | -0.832 |
| DS04 | -1.924 | -1.13 |
| DS0c | -2.349 | -2.681 |
| GP01 | -0.222 | -2.179 |
| GP02 | -0.825 | -2.107 |
| GP0c | 0.754 | -0.279 |
| NOD | 0.0 | -1.783 |
| NZO | -1.253 | -2.823 |
| PWK | -0.209 | -3.125 |
| H37Rv_KO_CtpC | -1.611 | -2.861 |
| H37Rv_KO_CtpD | -0.961 | -0.738 |
| H37Rv_KO_Rv1272 | -0.317 | 0.533 |
| H37Rv_KO_SugABC | -1.171 | 0.836 |
| H37Rv_KO_MbtN | 0.617 | -0.035 |
| Trans05 | -0.408 | -1.893 |
| macrophage_unactivated | -0.66 | -1.815 |
| IL1 | -0.237 | 2.073 |
| Rapamycin | -0.506 | 0.724 |
| Tcell | 0.0 | -1.733 |
| GMCSF | -0.106 | -0.106 |
| IFNab | -0.242 | -0.964 |
| IFNg | -0.559 | -0.446 |
| IFNg_GMCSF1 | -0.657 | -0.776 |
| Rv1432_day32 | -2.596 | -3.95 |
| Rv1565c_day32 | -2.426 | -3.657 |
| secA2_input | 1.429 | 0.255 |
| delta_Rv3594 | -1.111 | 0.015 |
| delta_Rv3717 | 0.083 | 0.327 |
| delta_Rv3811 | -0.568 | -0.348 |
| delta_Rv0954 | -0.938 | -0.363 |
| PonA1 | 0.184 | 0.679 |
| EccD1_KO | -1.033 | 0.204 |
| EspI_KO | -1.243 | 0.528 |
| PE35_KO | -1.033 | -0.566 |
| PPE68_KO | -0.646 | 0.0 |
| glycerol2 | -0.451 | -1.454 |
| lignocerate | -1.74 | -2.435 |
| oleate | -0.457 | 0.252 |
| phosphatidylcholine | -1.581 | -1.454 |
| acetate | -1.342 | -0.376 |
| glucAc | -1.726 | -0.256 |
| Rv0950ko | 0.793 | -0.368 |
| Rv1096ko | 1.188 | 0.051 |
| Rv3684ko | 1.392 | -0.773 |
| delta_otsA_trehalose | -0.079 | 0.23 |