Top 10 genes with highest correlation to Rv3315c/cdd:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5037) | info on Rv2583c/relA |
| Rv1325c/PE_PGRS24 | (cc=0.5002) | info on Rv1325c/PE_PGRS24 |
| Rv2388c/hemN | (cc=0.4678) | info on Rv2388c/hemN |
| Rv1282c/oppC | (cc=0.4668) | info on Rv1282c/oppC |
| Rv1833c/- | (cc=0.4624) | info on Rv1833c/- |
| Rv2333c/stp | (cc=0.4576) | info on Rv2333c/stp |
| Rv1731/gabD2 | (cc=0.4546) | info on Rv1731/gabD2 |
| Rv2506/- | (cc=0.4501) | info on Rv2506/- |
| Rv0532/PE_PGRS6 | (cc=0.4499) | info on Rv0532/PE_PGRS6 |
| Rv1290c/- | (cc=0.4467) | info on Rv1290c/- |
Correlation of Rv3315c/cdd with Rv2506/-
Normalized LFCs for Rv3315c/cdd:
(description and provenance of datasets)
| Rv3315c/cdd | Rv2506/- | |
| Fe_supp_jason_reseq | 0.598 | 0.257 |
| low_pH_jason_reseq | -0.811 | -1.241 |
| NO_jason_reseq | 0.053 | -0.299 |
| B6_jason_reseq | -1.586 | -1.395 |
| MHCII_jason_reseq | -2.374 | -2.083 |
| Isoniazid02 | 4.528 | 0.106 |
| Rifampicin4 | 0.184 | 0.263 |
| Ethambutol3 | 4.387 | 4.373 |
| Meropenem3 | 0.218 | -0.207 |
| Vancomycin16 | 0.215 | 0.194 |
| Rv2680_day32 | -1.854 | -2.588 |
| H37Rv_KO_MarP | 0.017 | 0.518 |
| hypoxia_3wks | -0.542 | -2.261 |
| hypoxia_6wks | -0.791 | -1.297 |
| glycerol | 0.489 | -0.819 |
| cholesterol | 0.825 | -3.208 |
| AJ | 0.069 | -1.338 |
| Bibs02 | -2.568 | -1.705 |
| Bibs02c | -2.402 | -2.736 |
| BL6 | -0.618 | -3.4 |
| BL6a | -1.078 | -2.834 |
| BXD01 | -0.466 | -2.884 |
| BXD010 | -0.187 | -2.876 |
| BXD011 | -0.121 | -2.362 |
| BXD03 | -0.881 | -1.046 |
| BXD04 | 0.207 | -1.617 |
| BXD05 | -1.268 | -3.53 |
| BXD06 | -0.45 | -2.074 |
| BXD07 | -0.109 | -3.4 |
| BXD08 | -0.105 | -3.03 |
| BXD09 | 0.725 | -2.073 |
| CAST | -2.644 | -1.8 |
| CCcont | -0.023 | -1.562 |
| DS01 | -1.347 | -2.643 |
| DS02 | -1.609 | -3.208 |
| DS04 | -0.694 | -1.689 |
| DS0c | 1.138 | -3.517 |
| GP01 | -1.993 | -1.748 |
| GP02 | -1.451 | -1.981 |
| GP0c | -1.616 | -2.802 |
| NOD | -1.222 | -0.984 |
| NZO | 0.308 | -2.297 |
| PWK | 0.918 | -0.563 |
| H37Rv_KO_CtpC | 1.976 | -2.634 |
| H37Rv_KO_CtpD | 1.535 | 0.329 |
| H37Rv_KO_Rv1272 | -1.179 | -3.308 |
| H37Rv_KO_SugABC | -1.335 | -2.796 |
| H37Rv_KO_MbtN | -0.828 | -1.131 |
| Trans05 | -0.02 | -3.26 |
| macrophage_unactivated | -1.543 | -2.02 |
| IL1 | -1.37 | -4.218 |
| Rapamycin | -1.501 | -5.352 |
| Tcell | -0.065 | 2.287 |
| GMCSF | -0.684 | -4.074 |
| IFNab | -0.713 | -4.477 |
| IFNg | -0.887 | -4.041 |
| IFNg_GMCSF1 | 0.358 | -5.153 |
| Rv1432_day32 | -1.431 | -0.825 |
| Rv1565c_day32 | -0.218 | -2.154 |
| secA2_input | -0.415 | 0.837 |
| delta_Rv3594 | 0.642 | -0.967 |
| delta_Rv3717 | 0.659 | -0.963 |
| delta_Rv3811 | 0.834 | -1.355 |
| delta_Rv0954 | -0.023 | -0.879 |
| PonA1 | 0.437 | 1.076 |
| EccD1_KO | -0.395 | -0.793 |
| EspI_KO | -0.083 | -1.996 |
| PE35_KO | 0.041 | -0.846 |
| PPE68_KO | 0.224 | -0.659 |
| glycerol2 | 0.965 | -0.815 |
| lignocerate | 1.355 | -1.805 |
| oleate | -0.88 | -1.287 |
| phosphatidylcholine | 0.885 | -0.65 |
| acetate | 0.72 | -0.474 |
| glucAc | 0.78 | -0.734 |
| Rv0950ko | -1.227 | 0.781 |
| Rv1096ko | 0.069 | -0.685 |
| Rv3684ko | 0.396 | -1.346 |
| delta_otsA_trehalose | 1.062 | 0.271 |