TnSeqCorr

Top 10 genes with highest correlation to Rv3315c/cdd:

update plotcorrelationlink to info on gene
Rv2583c/relA (cc=0.5037) info on Rv2583c/relA
Rv1325c/PE_PGRS24 (cc=0.5002) info on Rv1325c/PE_PGRS24
Rv2388c/hemN (cc=0.4678) info on Rv2388c/hemN
Rv1282c/oppC (cc=0.4668) info on Rv1282c/oppC
Rv1833c/- (cc=0.4624) info on Rv1833c/-
Rv2333c/stp (cc=0.4576) info on Rv2333c/stp
Rv1731/gabD2 (cc=0.4546) info on Rv1731/gabD2
Rv2506/- (cc=0.4501) info on Rv2506/-
Rv0532/PE_PGRS6 (cc=0.4499) info on Rv0532/PE_PGRS6
Rv1290c/- (cc=0.4467) info on Rv1290c/-

Correlation of Rv3315c/cdd with Rv2388c/hemN

Normalized LFCs for Rv3315c/cdd:
(description and provenance of datasets)
Rv3315c/cddRv2388c/hemN
Fe_supp_jason_reseq

0.598

-0.526

low_pH_jason_reseq

-0.811

-0.765

NO_jason_reseq

0.053

1.491

B6_jason_reseq

-1.586

0.253

MHCII_jason_reseq

-2.374

0.287

Isoniazid02

4.528

2.702

Rifampicin4

0.184

0.747

Ethambutol3

4.387

2.329

Meropenem3

0.218

-0.023

Vancomycin16

0.215

0.488

Rv2680_day32

-1.854

-0.316

H37Rv_KO_MarP

0.017

0.219

hypoxia_3wks

-0.542

-1.053

hypoxia_6wks

-0.791

-0.986

glycerol

0.489

0.253

cholesterol

0.825

3.017

AJ

0.069

0.282

Bibs02

-2.568

-0.086

Bibs02c

-2.402

0.185

BL6

-0.618

-0.179

BL6a

-1.078

0.132

BXD01

-0.466

-0.309

BXD010

-0.187

0.29

BXD011

-0.121

-0.417

BXD03

-0.881

-0.025

BXD04

0.207

-0.662

BXD05

-1.268

-0.199

BXD06

-0.45

-0.428

BXD07

-0.109

-0.039

BXD08

-0.105

-0.148

BXD09

0.725

-0.451

CAST

-2.644

-0.13

CCcont

-0.023

0.125

DS01

-1.347

0.317

DS02

-1.609

-0.54

DS04

-0.694

-0.394

DS0c

1.138

0.039

GP01

-1.993

0.227

GP02

-1.451

-0.929

GP0c

-1.616

-0.45

NOD

-1.222

-0.194

NZO

0.308

-0.038

PWK

0.918

-0.169

H37Rv_KO_CtpC

1.976

-0.833

H37Rv_KO_CtpD

1.535

-0.122

H37Rv_KO_Rv1272

-1.179

-0.516

H37Rv_KO_SugABC

-1.335

-0.769

H37Rv_KO_MbtN

-0.828

0.023

Trans05

-0.02

0.196

macrophage_unactivated

-1.543

0.12

IL1

-1.37

0.389

Rapamycin

-1.501

0.509

Tcell

-0.065

-0.101

GMCSF

-0.684

0.491

IFNab

-0.713

-0.236

IFNg

-0.887

-0.166

IFNg_GMCSF1

0.358

0.852

Rv1432_day32

-1.431

0.181

Rv1565c_day32

-0.218

0.689

secA2_input

-0.415

0.16

delta_Rv3594

0.642

-0.214

delta_Rv3717

0.659

0.878

delta_Rv3811

0.834

0.057

delta_Rv0954

-0.023

0.685

PonA1

0.437

-0.067

EccD1_KO

-0.395

-0.132

EspI_KO

-0.083

-0.257

PE35_KO

0.041

-0.315

PPE68_KO

0.224

-0.077

glycerol2

0.965

1.037

lignocerate

1.355

1.249

oleate

-0.88

0.159

phosphatidylcholine

0.885

1.09

acetate

0.72

1.694

glucAc

0.78

1.579

Rv0950ko

-1.227

0.552

Rv1096ko

0.069

-0.142

Rv3684ko

0.396

-0.124

delta_otsA_trehalose

1.062

-0.852