Top 10 genes with highest correlation to Rv3315c/cdd:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5037) | info on Rv2583c/relA |
| Rv1325c/PE_PGRS24 | (cc=0.5002) | info on Rv1325c/PE_PGRS24 |
| Rv2388c/hemN | (cc=0.4678) | info on Rv2388c/hemN |
| Rv1282c/oppC | (cc=0.4668) | info on Rv1282c/oppC |
| Rv1833c/- | (cc=0.4624) | info on Rv1833c/- |
| Rv2333c/stp | (cc=0.4576) | info on Rv2333c/stp |
| Rv1731/gabD2 | (cc=0.4546) | info on Rv1731/gabD2 |
| Rv2506/- | (cc=0.4501) | info on Rv2506/- |
| Rv0532/PE_PGRS6 | (cc=0.4499) | info on Rv0532/PE_PGRS6 |
| Rv1290c/- | (cc=0.4467) | info on Rv1290c/- |
Correlation of Rv3315c/cdd with Rv2333c/stp
Normalized LFCs for Rv3315c/cdd:
(description and provenance of datasets)
| Rv3315c/cdd | Rv2333c/stp | |
| Fe_supp_jason_reseq | 0.598 | 0.278 |
| low_pH_jason_reseq | -0.811 | -0.611 |
| NO_jason_reseq | 0.053 | -0.404 |
| B6_jason_reseq | -1.586 | 0.446 |
| MHCII_jason_reseq | -2.374 | 0.189 |
| Isoniazid02 | 4.528 | 2.51 |
| Rifampicin4 | 0.184 | 0.249 |
| Ethambutol3 | 4.387 | 1.744 |
| Meropenem3 | 0.218 | 0.189 |
| Vancomycin16 | 0.215 | 0.488 |
| Rv2680_day32 | -1.854 | -0.032 |
| H37Rv_KO_MarP | 0.017 | 0.425 |
| hypoxia_3wks | -0.542 | -0.211 |
| hypoxia_6wks | -0.791 | -0.163 |
| glycerol | 0.489 | -0.247 |
| cholesterol | 0.825 | -0.494 |
| AJ | 0.069 | 0.491 |
| Bibs02 | -2.568 | -0.125 |
| Bibs02c | -2.402 | 0.089 |
| BL6 | -0.618 | -0.171 |
| BL6a | -1.078 | -0.063 |
| BXD01 | -0.466 | -0.11 |
| BXD010 | -0.187 | 0.307 |
| BXD011 | -0.121 | 0.096 |
| BXD03 | -0.881 | 0.193 |
| BXD04 | 0.207 | 0.1 |
| BXD05 | -1.268 | 0.401 |
| BXD06 | -0.45 | 0.104 |
| BXD07 | -0.109 | 0.0 |
| BXD08 | -0.105 | 0.226 |
| BXD09 | 0.725 | 0.29 |
| CAST | -2.644 | 0.506 |
| CCcont | -0.023 | 0.037 |
| DS01 | -1.347 | 0.044 |
| DS02 | -1.609 | 0.126 |
| DS04 | -0.694 | -0.218 |
| DS0c | 1.138 | 0.189 |
| GP01 | -1.993 | -0.084 |
| GP02 | -1.451 | 0.146 |
| GP0c | -1.616 | 0.214 |
| NOD | -1.222 | 0.169 |
| NZO | 0.308 | 0.442 |
| PWK | 0.918 | 0.46 |
| H37Rv_KO_CtpC | 1.976 | 0.425 |
| H37Rv_KO_CtpD | 1.535 | 0.178 |
| H37Rv_KO_Rv1272 | -1.179 | -0.281 |
| H37Rv_KO_SugABC | -1.335 | -0.259 |
| H37Rv_KO_MbtN | -0.828 | -0.003 |
| Trans05 | -0.02 | -0.045 |
| macrophage_unactivated | -1.543 | -0.211 |
| IL1 | -1.37 | 0.205 |
| Rapamycin | -1.501 | 0.0 |
| Tcell | -0.065 | -0.27 |
| GMCSF | -0.684 | 0.428 |
| IFNab | -0.713 | 0.351 |
| IFNg | -0.887 | 0.299 |
| IFNg_GMCSF1 | 0.358 | -0.016 |
| Rv1432_day32 | -1.431 | 0.053 |
| Rv1565c_day32 | -0.218 | 0.866 |
| secA2_input | -0.415 | -0.686 |
| delta_Rv3594 | 0.642 | 0.471 |
| delta_Rv3717 | 0.659 | -0.201 |
| delta_Rv3811 | 0.834 | 0.11 |
| delta_Rv0954 | -0.023 | 0.538 |
| PonA1 | 0.437 | 0.355 |
| EccD1_KO | -0.395 | 0.227 |
| EspI_KO | -0.083 | 0.442 |
| PE35_KO | 0.041 | 0.0 |
| PPE68_KO | 0.224 | 0.138 |
| glycerol2 | 0.965 | -0.128 |
| lignocerate | 1.355 | 0.255 |
| oleate | -0.88 | -0.325 |
| phosphatidylcholine | 0.885 | -0.083 |
| acetate | 0.72 | -0.231 |
| glucAc | 0.78 | 0.244 |
| Rv0950ko | -1.227 | 0.296 |
| Rv1096ko | 0.069 | -0.178 |
| Rv3684ko | 0.396 | -0.462 |
| delta_otsA_trehalose | 1.062 | -0.557 |