Top 10 genes with highest correlation to Rv3315c/cdd:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2583c/relA | (cc=0.5037) | info on Rv2583c/relA |
| Rv1325c/PE_PGRS24 | (cc=0.5002) | info on Rv1325c/PE_PGRS24 |
| Rv2388c/hemN | (cc=0.4678) | info on Rv2388c/hemN |
| Rv1282c/oppC | (cc=0.4668) | info on Rv1282c/oppC |
| Rv1833c/- | (cc=0.4624) | info on Rv1833c/- |
| Rv2333c/stp | (cc=0.4576) | info on Rv2333c/stp |
| Rv1731/gabD2 | (cc=0.4546) | info on Rv1731/gabD2 |
| Rv2506/- | (cc=0.4501) | info on Rv2506/- |
| Rv0532/PE_PGRS6 | (cc=0.4499) | info on Rv0532/PE_PGRS6 |
| Rv1290c/- | (cc=0.4467) | info on Rv1290c/- |
Correlation of Rv3315c/cdd with Rv1833c/-
Normalized LFCs for Rv3315c/cdd:
(description and provenance of datasets)
| Rv3315c/cdd | Rv1833c/- | |
| Fe_supp_jason_reseq | 0.598 | -0.456 |
| low_pH_jason_reseq | -0.811 | -0.502 |
| NO_jason_reseq | 0.053 | 0.071 |
| B6_jason_reseq | -1.586 | -0.689 |
| MHCII_jason_reseq | -2.374 | -0.529 |
| Isoniazid02 | 4.528 | 1.359 |
| Rifampicin4 | 0.184 | 0.801 |
| Ethambutol3 | 4.387 | 2.69 |
| Meropenem3 | 0.218 | 1.206 |
| Vancomycin16 | 0.215 | 0.464 |
| Rv2680_day32 | -1.854 | -0.806 |
| H37Rv_KO_MarP | 0.017 | -0.291 |
| hypoxia_3wks | -0.542 | -0.877 |
| hypoxia_6wks | -0.791 | 0.221 |
| glycerol | 0.489 | -0.408 |
| cholesterol | 0.825 | 0.541 |
| AJ | 0.069 | -1.303 |
| Bibs02 | -2.568 | -0.54 |
| Bibs02c | -2.402 | -0.279 |
| BL6 | -0.618 | -0.346 |
| BL6a | -1.078 | -0.509 |
| BXD01 | -0.466 | -0.299 |
| BXD010 | -0.187 | -0.329 |
| BXD011 | -0.121 | -0.038 |
| BXD03 | -0.881 | -1.04 |
| BXD04 | 0.207 | -0.648 |
| BXD05 | -1.268 | -0.398 |
| BXD06 | -0.45 | 0.226 |
| BXD07 | -0.109 | -0.127 |
| BXD08 | -0.105 | -0.446 |
| BXD09 | 0.725 | -0.457 |
| CAST | -2.644 | 0.776 |
| CCcont | -0.023 | -0.427 |
| DS01 | -1.347 | 0.2 |
| DS02 | -1.609 | 0.369 |
| DS04 | -0.694 | -0.242 |
| DS0c | 1.138 | -0.308 |
| GP01 | -1.993 | -0.998 |
| GP02 | -1.451 | 0.435 |
| GP0c | -1.616 | 0.236 |
| NOD | -1.222 | 1.29 |
| NZO | 0.308 | -0.532 |
| PWK | 0.918 | -0.396 |
| H37Rv_KO_CtpC | 1.976 | -0.344 |
| H37Rv_KO_CtpD | 1.535 | 0.292 |
| H37Rv_KO_Rv1272 | -1.179 | 0.139 |
| H37Rv_KO_SugABC | -1.335 | -0.732 |
| H37Rv_KO_MbtN | -0.828 | 1.985 |
| Trans05 | -0.02 | -0.241 |
| macrophage_unactivated | -1.543 | -0.862 |
| IL1 | -1.37 | -1.255 |
| Rapamycin | -1.501 | -0.706 |
| Tcell | -0.065 | -1.03 |
| GMCSF | -0.684 | -0.43 |
| IFNab | -0.713 | -0.868 |
| IFNg | -0.887 | -1.486 |
| IFNg_GMCSF1 | 0.358 | -0.386 |
| Rv1432_day32 | -1.431 | -0.153 |
| Rv1565c_day32 | -0.218 | 0.13 |
| secA2_input | -0.415 | -1.086 |
| delta_Rv3594 | 0.642 | 0.716 |
| delta_Rv3717 | 0.659 | 0.443 |
| delta_Rv3811 | 0.834 | 0.915 |
| delta_Rv0954 | -0.023 | 0.756 |
| PonA1 | 0.437 | 1.118 |
| EccD1_KO | -0.395 | 0.039 |
| EspI_KO | -0.083 | -0.533 |
| PE35_KO | 0.041 | -0.344 |
| PPE68_KO | 0.224 | 0.31 |
| glycerol2 | 0.965 | 0.224 |
| lignocerate | 1.355 | 1.335 |
| oleate | -0.88 | -0.123 |
| phosphatidylcholine | 0.885 | 0.668 |
| acetate | 0.72 | 2.091 |
| glucAc | 0.78 | 1.638 |
| Rv0950ko | -1.227 | 0.259 |
| Rv1096ko | 0.069 | 0.383 |
| Rv3684ko | 0.396 | 0.996 |
| delta_otsA_trehalose | 1.062 | 0.44 |