TnSeqCorr

Top 10 genes with highest correlation to Rv3315c/cdd:

update plotcorrelationlink to info on gene
Rv2583c/relA (cc=0.5037) info on Rv2583c/relA
Rv1325c/PE_PGRS24 (cc=0.5002) info on Rv1325c/PE_PGRS24
Rv2388c/hemN (cc=0.4678) info on Rv2388c/hemN
Rv1282c/oppC (cc=0.4668) info on Rv1282c/oppC
Rv1833c/- (cc=0.4624) info on Rv1833c/-
Rv2333c/stp (cc=0.4576) info on Rv2333c/stp
Rv1731/gabD2 (cc=0.4546) info on Rv1731/gabD2
Rv2506/- (cc=0.4501) info on Rv2506/-
Rv0532/PE_PGRS6 (cc=0.4499) info on Rv0532/PE_PGRS6
Rv1290c/- (cc=0.4467) info on Rv1290c/-

Correlation of Rv3315c/cdd with Rv2583c/relA

Normalized LFCs for Rv3315c/cdd:
(description and provenance of datasets)
Rv3315c/cddRv2583c/relA
Fe_supp_jason_reseq

0.598

-0.268

low_pH_jason_reseq

-0.811

-2.113

NO_jason_reseq

0.053

-0.108

B6_jason_reseq

-1.586

-1.759

MHCII_jason_reseq

-2.374

-0.901

Isoniazid02

4.528

6.0

Rifampicin4

0.184

1.822

Ethambutol3

4.387

1.732

Meropenem3

0.218

0.284

Vancomycin16

0.215

-2.122

Rv2680_day32

-1.854

-0.816

H37Rv_KO_MarP

0.017

-0.814

hypoxia_3wks

-0.542

-3.126

hypoxia_6wks

-0.791

-2.907

glycerol

0.489

-3.553

cholesterol

0.825

-3.023

AJ

0.069

-3.504

Bibs02

-2.568

-2.595

Bibs02c

-2.402

-4.611

BL6

-0.618

-0.535

BL6a

-1.078

-3.566

BXD01

-0.466

-1.705

BXD010

-0.187

-2.903

BXD011

-0.121

-2.658

BXD03

-0.881

-3.156

BXD04

0.207

-2.976

BXD05

-1.268

-2.368

BXD06

-0.45

-3.212

BXD07

-0.109

-1.52

BXD08

-0.105

-3.201

BXD09

0.725

-2.312

CAST

-2.644

-4.807

CCcont

-0.023

-0.405

DS01

-1.347

-5.205

DS02

-1.609

-4.539

DS04

-0.694

-4.819

DS0c

1.138

-4.917

GP01

-1.993

-2.625

GP02

-1.451

-1.4

GP0c

-1.616

-2.515

NOD

-1.222

-4.815

NZO

0.308

-3.676

PWK

0.918

-4.322

H37Rv_KO_CtpC

1.976

-3.067

H37Rv_KO_CtpD

1.535

-1.532

H37Rv_KO_Rv1272

-1.179

-3.023

H37Rv_KO_SugABC

-1.335

-1.743

H37Rv_KO_MbtN

-0.828

0.679

Trans05

-0.02

-2.879

macrophage_unactivated

-1.543

-0.253

IL1

-1.37

-0.756

Rapamycin

-1.501

-2.105

Tcell

-0.065

-1.31

GMCSF

-0.684

-0.673

IFNab

-0.713

-0.632

IFNg

-0.887

-0.81

IFNg_GMCSF1

0.358

-2.357

Rv1432_day32

-1.431

-2.381

Rv1565c_day32

-0.218

-1.899

secA2_input

-0.415

-0.629

delta_Rv3594

0.642

1.337

delta_Rv3717

0.659

1.472

delta_Rv3811

0.834

1.616

delta_Rv0954

-0.023

0.076

PonA1

0.437

-0.839

EccD1_KO

-0.395

-2.664

EspI_KO

-0.083

-3.719

PE35_KO

0.041

-2.185

PPE68_KO

0.224

-0.525

glycerol2

0.965

4.726

lignocerate

1.355

1.218

oleate

-0.88

-0.196

phosphatidylcholine

0.885

3.018

acetate

0.72

1.18

glucAc

0.78

1.034

Rv0950ko

-1.227

-1.851

Rv1096ko

0.069

-0.971

Rv3684ko

0.396

0.305

delta_otsA_trehalose

1.062

2.272