TnSeqCorr

Top 10 genes with highest correlation to Rv3314c/deoA:

update plotcorrelationlink to info on gene
Rv2038c/- (cc=0.4941) info on Rv2038c/-
Rv2758c/vapB21 (cc=0.4894) info on Rv2758c/vapB21
Rv0093c/- (cc=0.4721) info on Rv0093c/-
Rv1964/yrbE3A (cc=0.4712) info on Rv1964/yrbE3A
Rv2871/vapB43 (cc=0.4622) info on Rv2871/vapB43
Rv2147c/- (cc=0.4616) info on Rv2147c/-
Rv1128c/- (cc=0.4494) info on Rv1128c/-
Rv3650/PE33 (cc=0.4446) info on Rv3650/PE33
Rv3036c/TB22.2 (cc=0.4375) info on Rv3036c/TB22.2
Rv3584/lpqE (cc=0.4355) info on Rv3584/lpqE

Correlation of Rv3314c/deoA with Rv3650/PE33

Normalized LFCs for Rv3314c/deoA:
(description and provenance of datasets)
Rv3314c/deoARv3650/PE33
Fe_supp_jason_reseq

-0.672

3.01

low_pH_jason_reseq

0.291

2.212

NO_jason_reseq

-0.753

-1.78

B6_jason_reseq

-1.302

-0.214

MHCII_jason_reseq

-1.01

-0.663

Isoniazid02

-0.217

1.394

Rifampicin4

0.203

0.812

Ethambutol3

-0.198

-0.14

Meropenem3

1.96

0.386

Vancomycin16

0.326

0.971

Rv2680_day32

-0.435

0.803

H37Rv_KO_MarP

-0.562

0.147

hypoxia_3wks

-0.542

1.029

hypoxia_6wks

0.061

1.777

glycerol

-0.519

-0.554

cholesterol

-0.398

-0.398

AJ

-0.479

-0.637

Bibs02

-1.229

1.249

Bibs02c

-1.155

-0.174

BL6

0.574

1.909

BL6a

-0.254

2.986

BXD01

0.405

3.607

BXD010

-0.224

1.662

BXD011

-0.284

2.278

BXD03

0.053

1.623

BXD04

0.308

4.115

BXD05

0.018

3.431

BXD06

0.529

2.714

BXD07

0.018

3.558

BXD08

0.783

3.925

BXD09

-0.038

3.04

CAST

-0.26

0.501

CCcont

1.179

2.967

DS01

-0.775

0.0

DS02

-0.214

1.976

DS04

-0.249

-0.533

DS0c

-0.245

-0.379

GP01

0.453

0.444

GP02

-0.387

2.625

GP0c

0.179

0.888

NOD

-0.778

-0.617

NZO

-0.478

-0.548

PWK

0.026

-0.539

H37Rv_KO_CtpC

1.041

2.905

H37Rv_KO_CtpD

-0.088

1.193

H37Rv_KO_Rv1272

0.841

-0.117

H37Rv_KO_SugABC

-0.99

-0.272

H37Rv_KO_MbtN

1.025

5.572

Trans05

1.346

3.09

macrophage_unactivated

0.644

0.77

IL1

0.789

0.955

Rapamycin

1.961

4.195

Tcell

0.231

1.147

GMCSF

0.187

-0.9

IFNab

0.759

1.451

IFNg

0.831

4.918

IFNg_GMCSF1

-0.484

0.346

Rv1432_day32

1.103

-2.639

Rv1565c_day32

0.859

-1.651

secA2_input

-0.866

-1.722

delta_Rv3594

0.0

4.006

delta_Rv3717

0.191

2.037

delta_Rv3811

-0.378

2.687

delta_Rv0954

-0.262

1.862

PonA1

-0.122

-0.56

EccD1_KO

0.086

-2.983

EspI_KO

-0.819

-0.773

PE35_KO

-0.656

-3.661

PPE68_KO

-0.72

-2.902

glycerol2

0.038

2.036

lignocerate

0.558

1.867

oleate

-1.289

-1.117

phosphatidylcholine

0.181

0.854

acetate

0.0

2.986

glucAc

0.302

2.521

Rv0950ko

-0.95

-2.844

Rv1096ko

-0.087

-0.492

Rv3684ko

-0.386

-0.462

delta_otsA_trehalose

0.168

0.75