TnSeqCorr

Top 10 genes with highest correlation to Rv3314c/deoA:

update plotcorrelationlink to info on gene
Rv2038c/- (cc=0.4941) info on Rv2038c/-
Rv2758c/vapB21 (cc=0.4894) info on Rv2758c/vapB21
Rv0093c/- (cc=0.4721) info on Rv0093c/-
Rv1964/yrbE3A (cc=0.4712) info on Rv1964/yrbE3A
Rv2871/vapB43 (cc=0.4622) info on Rv2871/vapB43
Rv2147c/- (cc=0.4616) info on Rv2147c/-
Rv1128c/- (cc=0.4494) info on Rv1128c/-
Rv3650/PE33 (cc=0.4446) info on Rv3650/PE33
Rv3036c/TB22.2 (cc=0.4375) info on Rv3036c/TB22.2
Rv3584/lpqE (cc=0.4355) info on Rv3584/lpqE

Correlation of Rv3314c/deoA with Rv1964/yrbE3A

Normalized LFCs for Rv3314c/deoA:
(description and provenance of datasets)
Rv3314c/deoARv1964/yrbE3A
Fe_supp_jason_reseq

-0.672

-0.073

low_pH_jason_reseq

0.291

-0.617

NO_jason_reseq

-0.753

-0.462

B6_jason_reseq

-1.302

-2.076

MHCII_jason_reseq

-1.01

-0.791

Isoniazid02

-0.217

0.354

Rifampicin4

0.203

0.761

Ethambutol3

-0.198

0.846

Meropenem3

1.96

0.583

Vancomycin16

0.326

0.615

Rv2680_day32

-0.435

-1.004

H37Rv_KO_MarP

-0.562

-0.26

hypoxia_3wks

-0.542

0.283

hypoxia_6wks

0.061

-0.044

glycerol

-0.519

-1.295

cholesterol

-0.398

-0.733

AJ

-0.479

0.254

Bibs02

-1.229

-0.596

Bibs02c

-1.155

0.045

BL6

0.574

0.527

BL6a

-0.254

-0.221

BXD01

0.405

-0.106

BXD010

-0.224

-0.215

BXD011

-0.284

0.438

BXD03

0.053

0.712

BXD04

0.308

0.135

BXD05

0.018

-0.197

BXD06

0.529

0.097

BXD07

0.018

0.104

BXD08

0.783

0.667

BXD09

-0.038

-0.095

CAST

-0.26

-0.966

CCcont

1.179

0.193

DS01

-0.775

-0.662

DS02

-0.214

-0.422

DS04

-0.249

-0.436

DS0c

-0.245

-0.154

GP01

0.453

1.515

GP02

-0.387

-1.02

GP0c

0.179

-0.057

NOD

-0.778

0.758

NZO

-0.478

-0.692

PWK

0.026

-0.672

H37Rv_KO_CtpC

1.041

0.933

H37Rv_KO_CtpD

-0.088

1.268

H37Rv_KO_Rv1272

0.841

0.787

H37Rv_KO_SugABC

-0.99

-1.387

H37Rv_KO_MbtN

1.025

1.105

Trans05

1.346

0.554

macrophage_unactivated

0.644

0.297

IL1

0.789

-0.383

Rapamycin

1.961

-0.04

Tcell

0.231

0.163

GMCSF

0.187

0.28

IFNab

0.759

0.475

IFNg

0.831

1.36

IFNg_GMCSF1

-0.484

0.383

Rv1432_day32

1.103

0.039

Rv1565c_day32

0.859

-0.272

secA2_input

-0.866

0.24

delta_Rv3594

0.0

0.405

delta_Rv3717

0.191

0.258

delta_Rv3811

-0.378

0.721

delta_Rv0954

-0.262

0.669

PonA1

-0.122

0.084

EccD1_KO

0.086

-0.664

EspI_KO

-0.819

-0.662

PE35_KO

-0.656

-0.379

PPE68_KO

-0.72

-0.31

glycerol2

0.038

0.153

lignocerate

0.558

0.509

oleate

-1.289

-0.634

phosphatidylcholine

0.181

0.136

acetate

0.0

1.124

glucAc

0.302

0.876

Rv0950ko

-0.95

0.151

Rv1096ko

-0.087

0.48

Rv3684ko

-0.386

0.888

delta_otsA_trehalose

0.168

0.359