TnSeqCorr

Top 10 genes with highest correlation to Rv3314c/deoA:

update plotcorrelationlink to info on gene
Rv2038c/- (cc=0.4941) info on Rv2038c/-
Rv2758c/vapB21 (cc=0.4894) info on Rv2758c/vapB21
Rv0093c/- (cc=0.4721) info on Rv0093c/-
Rv1964/yrbE3A (cc=0.4712) info on Rv1964/yrbE3A
Rv2871/vapB43 (cc=0.4622) info on Rv2871/vapB43
Rv2147c/- (cc=0.4616) info on Rv2147c/-
Rv1128c/- (cc=0.4494) info on Rv1128c/-
Rv3650/PE33 (cc=0.4446) info on Rv3650/PE33
Rv3036c/TB22.2 (cc=0.4375) info on Rv3036c/TB22.2
Rv3584/lpqE (cc=0.4355) info on Rv3584/lpqE

Correlation of Rv3314c/deoA with Rv3584/lpqE

Normalized LFCs for Rv3314c/deoA:
(description and provenance of datasets)
Rv3314c/deoARv3584/lpqE
Fe_supp_jason_reseq

-0.672

0.696

low_pH_jason_reseq

0.291

1.337

NO_jason_reseq

-0.753

-1.775

B6_jason_reseq

-1.302

-1.071

MHCII_jason_reseq

-1.01

-1.855

Isoniazid02

-0.217

0.745

Rifampicin4

0.203

1.032

Ethambutol3

-0.198

2.813

Meropenem3

1.96

3.481

Vancomycin16

0.326

0.117

Rv2680_day32

-0.435

0.223

H37Rv_KO_MarP

-0.562

-0.056

hypoxia_3wks

-0.542

-0.861

hypoxia_6wks

0.061

-0.464

glycerol

-0.519

-2.035

cholesterol

-0.398

-0.775

AJ

-0.479

-0.977

Bibs02

-1.229

-0.62

Bibs02c

-1.155

-2.166

BL6

0.574

0.257

BL6a

-0.254

-0.095

BXD01

0.405

0.783

BXD010

-0.224

0.645

BXD011

-0.284

1.338

BXD03

0.053

0.837

BXD04

0.308

1.091

BXD05

0.018

1.053

BXD06

0.529

1.089

BXD07

0.018

0.952

BXD08

0.783

1.162

BXD09

-0.038

0.73

CAST

-0.26

1.054

CCcont

1.179

-0.048

DS01

-0.775

-0.994

DS02

-0.214

-0.069

DS04

-0.249

-0.672

DS0c

-0.245

-1.758

GP01

0.453

1.018

GP02

-0.387

0.607

GP0c

0.179

0.306

NOD

-0.778

0.801

NZO

-0.478

-0.764

PWK

0.026

-0.708

H37Rv_KO_CtpC

1.041

0.537

H37Rv_KO_CtpD

-0.088

-2.359

H37Rv_KO_Rv1272

0.841

0.315

H37Rv_KO_SugABC

-0.99

0.997

H37Rv_KO_MbtN

1.025

-0.32

Trans05

1.346

0.531

macrophage_unactivated

0.644

0.271

IL1

0.789

-0.831

Rapamycin

1.961

0.617

Tcell

0.231

0.619

GMCSF

0.187

-0.842

IFNab

0.759

0.115

IFNg

0.831

0.166

IFNg_GMCSF1

-0.484

0.581

Rv1432_day32

1.103

0.258

Rv1565c_day32

0.859

0.0

secA2_input

-0.866

0.124

delta_Rv3594

0.0

-0.75

delta_Rv3717

0.191

-1.207

delta_Rv3811

-0.378

-0.519

delta_Rv0954

-0.262

-1.01

PonA1

-0.122

0.209

EccD1_KO

0.086

-0.483

EspI_KO

-0.819

-0.85

PE35_KO

-0.656

-1.339

PPE68_KO

-0.72

-1.225

glycerol2

0.038

-0.755

lignocerate

0.558

0.051

oleate

-1.289

-0.441

phosphatidylcholine

0.181

0.048

acetate

0.0

-0.332

glucAc

0.302

-0.447

Rv0950ko

-0.95

-0.534

Rv1096ko

-0.087

1.037

Rv3684ko

-0.386

-0.206

delta_otsA_trehalose

0.168

0.51