Top 10 genes with highest correlation to Rv3254/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1472/echA12 | (cc=0.5954) | info on Rv1472/echA12 |
| Rv1356c/- | (cc=0.5214) | info on Rv1356c/- |
| Rv1856c/- | (cc=0.4477) | info on Rv1856c/- |
| Rv2809/- | (cc=0.4041) | info on Rv2809/- |
| Rv2939/papA5 | (cc=0.4003) | info on Rv2939/papA5 |
| Rv2930/fadD26 | (cc=0.398) | info on Rv2930/fadD26 |
| Rv2935/ppsE | (cc=0.3927) | info on Rv2935/ppsE |
| Rv1703c/- | (cc=0.388) | info on Rv1703c/- |
| Rv2934/ppsD | (cc=0.3828) | info on Rv2934/ppsD |
| Rv2287/yjcE | (cc=0.3819) | info on Rv2287/yjcE |
Correlation of Rv3254/- with Rv2935/ppsE
Normalized LFCs for Rv3254/-:
(description and provenance of datasets)
| Rv3254/- | Rv2935/ppsE | |
| Fe_supp_jason_reseq | -0.456 | 1.16 |
| low_pH_jason_reseq | -0.08 | 2.523 |
| NO_jason_reseq | 0.903 | -0.625 |
| B6_jason_reseq | -0.289 | 2.04 |
| MHCII_jason_reseq | 0.926 | -2.889 |
| Isoniazid02 | 0.019 | -0.095 |
| Rifampicin4 | -0.517 | 0.953 |
| Ethambutol3 | 0.288 | 0.67 |
| Meropenem3 | 0.25 | 0.156 |
| Vancomycin16 | -0.255 | 0.096 |
| Rv2680_day32 | -0.491 | -1.809 |
| H37Rv_KO_MarP | 0.226 | -0.435 |
| hypoxia_3wks | -0.032 | 0.451 |
| hypoxia_6wks | 0.217 | -0.503 |
| glycerol | -0.401 | 3.976 |
| cholesterol | 0.015 | 2.724 |
| AJ | 0.494 | 0.61 |
| Bibs02 | 0.433 | -2.987 |
| Bibs02c | -0.353 | -3.519 |
| BL6 | 0.365 | 0.422 |
| BL6a | 0.039 | -0.9 |
| BXD01 | -0.463 | 1.388 |
| BXD010 | -0.149 | -0.12 |
| BXD011 | -0.35 | -0.745 |
| BXD03 | 0.42 | -0.282 |
| BXD04 | 0.318 | 0.537 |
| BXD05 | 0.218 | -1.467 |
| BXD06 | -0.241 | 0.04 |
| BXD07 | -0.028 | -0.056 |
| BXD08 | -0.09 | 1.12 |
| BXD09 | 0.148 | -0.494 |
| CAST | -0.012 | 2.471 |
| CCcont | 0.037 | 1.244 |
| DS01 | 0.116 | 0.489 |
| DS02 | 0.287 | 1.027 |
| DS04 | -0.433 | -0.098 |
| DS0c | 0.38 | -0.179 |
| GP01 | 0.771 | -2.328 |
| GP02 | 0.087 | -1.886 |
| GP0c | -0.251 | -3.195 |
| NOD | 0.706 | 1.97 |
| NZO | 0.77 | 2.195 |
| PWK | 0.077 | -0.121 |
| H37Rv_KO_CtpC | 0.339 | -0.814 |
| H37Rv_KO_CtpD | 0.417 | -0.537 |
| H37Rv_KO_Rv1272 | 0.938 | -1.217 |
| H37Rv_KO_SugABC | 0.39 | 1.304 |
| H37Rv_KO_MbtN | 0.591 | 0.644 |
| Trans05 | 0.257 | -0.371 |
| macrophage_unactivated | 2.591 | 3.961 |
| IL1 | -1.068 | -2.572 |
| Rapamycin | -0.654 | -2.167 |
| Tcell | 2.597 | 3.829 |
| GMCSF | 0.407 | -2.519 |
| IFNab | -0.46 | -1.911 |
| IFNg | -1.045 | -3.659 |
| IFNg_GMCSF1 | -0.396 | -1.159 |
| Rv1432_day32 | -0.447 | -0.15 |
| Rv1565c_day32 | 0.243 | -0.199 |
| secA2_input | 0.011 | -0.581 |
| delta_Rv3594 | 0.165 | -2.158 |
| delta_Rv3717 | 0.026 | -2.386 |
| delta_Rv3811 | -0.174 | -2.37 |
| delta_Rv0954 | -0.646 | -2.076 |
| PonA1 | -0.6 | -1.394 |
| EccD1_KO | 0.243 | -3.545 |
| EspI_KO | 0.368 | -3.074 |
| PE35_KO | 0.904 | 1.631 |
| PPE68_KO | 1.184 | 0.118 |
| glycerol2 | -0.038 | 0.74 |
| lignocerate | 0.487 | 0.588 |
| oleate | 0.111 | 0.732 |
| phosphatidylcholine | 0.406 | 0.867 |
| acetate | 0.066 | -0.289 |
| glucAc | -0.108 | -0.328 |
| Rv0950ko | -0.621 | -4.282 |
| Rv1096ko | -0.112 | -5.799 |
| Rv3684ko | -0.223 | -3.223 |
| delta_otsA_trehalose | 0.75 | 2.809 |