Top 10 genes with highest correlation to Rv3254/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1472/echA12 | (cc=0.5954) | info on Rv1472/echA12 |
| Rv1356c/- | (cc=0.5214) | info on Rv1356c/- |
| Rv1856c/- | (cc=0.4477) | info on Rv1856c/- |
| Rv2809/- | (cc=0.4041) | info on Rv2809/- |
| Rv2939/papA5 | (cc=0.4003) | info on Rv2939/papA5 |
| Rv2930/fadD26 | (cc=0.398) | info on Rv2930/fadD26 |
| Rv2935/ppsE | (cc=0.3927) | info on Rv2935/ppsE |
| Rv1703c/- | (cc=0.388) | info on Rv1703c/- |
| Rv2934/ppsD | (cc=0.3828) | info on Rv2934/ppsD |
| Rv2287/yjcE | (cc=0.3819) | info on Rv2287/yjcE |
Correlation of Rv3254/- with Rv2930/fadD26
Normalized LFCs for Rv3254/-:
(description and provenance of datasets)
| Rv3254/- | Rv2930/fadD26 | |
| Fe_supp_jason_reseq | -0.456 | 2.243 |
| low_pH_jason_reseq | -0.08 | 1.688 |
| NO_jason_reseq | 0.903 | -0.675 |
| B6_jason_reseq | -0.289 | 1.066 |
| MHCII_jason_reseq | 0.926 | -3.531 |
| Isoniazid02 | 0.019 | -0.426 |
| Rifampicin4 | -0.517 | 0.926 |
| Ethambutol3 | 0.288 | -0.214 |
| Meropenem3 | 0.25 | 0.059 |
| Vancomycin16 | -0.255 | 0.17 |
| Rv2680_day32 | -0.491 | -2.609 |
| H37Rv_KO_MarP | 0.226 | -1.07 |
| hypoxia_3wks | -0.032 | 0.538 |
| hypoxia_6wks | 0.217 | -0.015 |
| glycerol | -0.401 | 2.867 |
| cholesterol | 0.015 | 2.251 |
| AJ | 0.494 | 0.101 |
| Bibs02 | 0.433 | -3.851 |
| Bibs02c | -0.353 | -3.957 |
| BL6 | 0.365 | 0.6 |
| BL6a | 0.039 | -0.936 |
| BXD01 | -0.463 | 1.813 |
| BXD010 | -0.149 | 0.264 |
| BXD011 | -0.35 | -0.469 |
| BXD03 | 0.42 | 0.264 |
| BXD04 | 0.318 | 1.085 |
| BXD05 | 0.218 | -1.226 |
| BXD06 | -0.241 | 0.487 |
| BXD07 | -0.028 | 0.423 |
| BXD08 | -0.09 | 1.449 |
| BXD09 | 0.148 | -0.073 |
| CAST | -0.012 | 2.726 |
| CCcont | 0.037 | 1.243 |
| DS01 | 0.116 | 0.116 |
| DS02 | 0.287 | 1.093 |
| DS04 | -0.433 | -0.29 |
| DS0c | 0.38 | -0.405 |
| GP01 | 0.771 | -2.892 |
| GP02 | 0.087 | -2.21 |
| GP0c | -0.251 | -3.561 |
| NOD | 0.706 | 2.066 |
| NZO | 0.77 | 2.235 |
| PWK | 0.077 | -0.09 |
| H37Rv_KO_CtpC | 0.339 | -0.315 |
| H37Rv_KO_CtpD | 0.417 | -0.227 |
| H37Rv_KO_Rv1272 | 0.938 | -0.036 |
| H37Rv_KO_SugABC | 0.39 | 1.17 |
| H37Rv_KO_MbtN | 0.591 | 0.714 |
| Trans05 | 0.257 | -0.095 |
| macrophage_unactivated | 2.591 | 4.264 |
| IL1 | -1.068 | -3.272 |
| Rapamycin | -0.654 | -2.774 |
| Tcell | 2.597 | 4.275 |
| GMCSF | 0.407 | -3.694 |
| IFNab | -0.46 | -2.733 |
| IFNg | -1.045 | -4.966 |
| IFNg_GMCSF1 | -0.396 | -2.423 |
| Rv1432_day32 | -0.447 | 0.0 |
| Rv1565c_day32 | 0.243 | -1.398 |
| secA2_input | 0.011 | -0.229 |
| delta_Rv3594 | 0.165 | -2.151 |
| delta_Rv3717 | 0.026 | -1.917 |
| delta_Rv3811 | -0.174 | -2.674 |
| delta_Rv0954 | -0.646 | -1.525 |
| PonA1 | -0.6 | -2.441 |
| EccD1_KO | 0.243 | -5.213 |
| EspI_KO | 0.368 | -3.246 |
| PE35_KO | 0.904 | 1.791 |
| PPE68_KO | 1.184 | -0.442 |
| glycerol2 | -0.038 | 1.723 |
| lignocerate | 0.487 | 1.322 |
| oleate | 0.111 | 1.762 |
| phosphatidylcholine | 0.406 | 1.788 |
| acetate | 0.066 | 0.101 |
| glucAc | -0.108 | 0.02 |
| Rv0950ko | -0.621 | -4.01 |
| Rv1096ko | -0.112 | -6.0 |
| Rv3684ko | -0.223 | -4.356 |
| delta_otsA_trehalose | 0.75 | 0.617 |