Top 10 genes with highest correlation to Rv3251c/rubA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2140c/TB18.6 | (cc=0.4828) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.4461) | info on Rv1819c/bacA |
| Rv2613c/- | (cc=0.4176) | info on Rv2613c/- |
| Rv1473/- | (cc=0.4141) | info on Rv1473/- |
| Rv0839/- | (cc=0.4065) | info on Rv0839/- |
| Rv3055/- | (cc=0.394) | info on Rv3055/- |
| Rv2359/zur | (cc=0.3867) | info on Rv2359/zur |
| Rv1541c/lprI | (cc=0.3831) | info on Rv1541c/lprI |
| Rv2409c/- | (cc=0.3808) | info on Rv2409c/- |
| Rv2599/- | (cc=0.3806) | info on Rv2599/- |
Correlation of Rv3251c/rubA with Rv3055/-
Normalized LFCs for Rv3251c/rubA:
(description and provenance of datasets)
| Rv3251c/rubA | Rv3055/- | |
| Fe_supp_jason_reseq | 0.575 | -0.038 |
| low_pH_jason_reseq | -1.574 | -1.819 |
| NO_jason_reseq | 0.221 | -1.748 |
| B6_jason_reseq | -0.698 | -0.069 |
| MHCII_jason_reseq | 0.698 | -0.203 |
| Isoniazid02 | -1.745 | 0.0 |
| Rifampicin4 | 0.896 | 0.306 |
| Ethambutol3 | 0.805 | 0.95 |
| Meropenem3 | 0.703 | 1.065 |
| Vancomycin16 | -0.085 | 0.554 |
| Rv2680_day32 | 1.918 | 0.761 |
| H37Rv_KO_MarP | 0.607 | 0.354 |
| hypoxia_3wks | -1.128 | -0.347 |
| hypoxia_6wks | -0.332 | -1.042 |
| glycerol | 0.679 | -0.515 |
| cholesterol | 0.205 | -1.488 |
| AJ | -0.294 | 0.042 |
| Bibs02 | -1.086 | -0.523 |
| Bibs02c | 0.555 | -0.703 |
| BL6 | -0.34 | -0.993 |
| BL6a | -0.778 | -0.894 |
| BXD01 | -0.585 | -0.426 |
| BXD010 | -1.455 | -1.402 |
| BXD011 | 0.228 | -0.563 |
| BXD03 | -0.088 | -0.923 |
| BXD04 | -0.762 | 0.632 |
| BXD05 | -0.043 | -0.967 |
| BXD06 | 0.239 | -1.168 |
| BXD07 | -0.343 | -0.913 |
| BXD08 | 0.009 | -1.242 |
| BXD09 | -0.282 | -1.333 |
| CAST | -0.292 | 0.123 |
| CCcont | 0.639 | -0.225 |
| DS01 | -0.842 | -0.958 |
| DS02 | -1.292 | -1.966 |
| DS04 | -0.988 | 0.298 |
| DS0c | -0.812 | 0.013 |
| GP01 | 0.614 | 0.765 |
| GP02 | -1.306 | 2.108 |
| GP0c | -1.213 | 1.447 |
| NOD | -0.116 | -0.718 |
| NZO | 0.49 | -0.571 |
| PWK | 0.287 | -0.692 |
| H37Rv_KO_CtpC | 1.016 | -1.75 |
| H37Rv_KO_CtpD | 0.391 | -0.895 |
| H37Rv_KO_Rv1272 | -0.179 | -1.317 |
| H37Rv_KO_SugABC | 0.705 | -0.799 |
| H37Rv_KO_MbtN | -0.434 | -0.993 |
| Trans05 | 0.032 | -1.181 |
| macrophage_unactivated | 1.411 | 0.593 |
| IL1 | -0.86 | -0.528 |
| Rapamycin | 0.0 | 0.052 |
| Tcell | -0.108 | -0.58 |
| GMCSF | -1.019 | 0.613 |
| IFNab | -1.04 | -1.088 |
| IFNg | -2.673 | -2.248 |
| IFNg_GMCSF1 | 0.902 | 0.817 |
| Rv1432_day32 | 0.164 | -1.304 |
| Rv1565c_day32 | 0.466 | 0.147 |
| secA2_input | 0.412 | 1.935 |
| delta_Rv3594 | 0.219 | -1.837 |
| delta_Rv3717 | -0.75 | -1.419 |
| delta_Rv3811 | 0.47 | -1.404 |
| delta_Rv0954 | 0.579 | -1.24 |
| PonA1 | -0.223 | -0.39 |
| EccD1_KO | 1.513 | 2.911 |
| EspI_KO | 1.5 | 1.517 |
| PE35_KO | 1.243 | 2.214 |
| PPE68_KO | 1.881 | 3.443 |
| glycerol2 | 0.73 | 1.407 |
| lignocerate | 0.319 | 0.838 |
| oleate | -0.214 | 0.502 |
| phosphatidylcholine | 0.398 | 1.241 |
| acetate | -0.03 | 0.083 |
| glucAc | 0.513 | 0.164 |
| Rv0950ko | 0.311 | -0.727 |
| Rv1096ko | -0.498 | 1.716 |
| Rv3684ko | -0.517 | 0.252 |
| delta_otsA_trehalose | -1.796 | -0.491 |