Top 10 genes with highest correlation to Rv3050c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0929/pstC2 | (cc=0.7818) | info on Rv0929/pstC2 |
| Rv3218/- | (cc=0.777) | info on Rv3218/- |
| Rv0642c/mmaA4 | (cc=0.7759) | info on Rv0642c/mmaA4 |
| Rv0928/pstS3 | (cc=0.7657) | info on Rv0928/pstS3 |
| Rv0930/pstA1 | (cc=0.7595) | info on Rv0930/pstA1 |
| Rv0502/- | (cc=0.7399) | info on Rv0502/- |
| Rv1058/fadD14 | (cc=0.7349) | info on Rv1058/fadD14 |
| Rv3818/- | (cc=0.7335) | info on Rv3818/- |
| Rv0820/phoT | (cc=0.7267) | info on Rv0820/phoT |
| Rv2735c/- | (cc=0.6974) | info on Rv2735c/- |
Correlation of Rv3050c/- with Rv0642c/mmaA4
Normalized LFCs for Rv3050c/-:
(description and provenance of datasets)
| Rv3050c/- | Rv0642c/mmaA4 | |
| Fe_supp_jason_reseq | -1.053 | 1.547 |
| low_pH_jason_reseq | 1.193 | 2.202 |
| NO_jason_reseq | 0.522 | 2.678 |
| B6_jason_reseq | -2.547 | -2.886 |
| MHCII_jason_reseq | -1.955 | -1.687 |
| Isoniazid02 | -0.063 | -1.333 |
| Rifampicin4 | -2.594 | -1.565 |
| Ethambutol3 | -0.612 | -2.112 |
| Meropenem3 | -0.918 | -1.815 |
| Vancomycin16 | -1.496 | -6.0 |
| Rv2680_day32 | 1.932 | -0.359 |
| H37Rv_KO_MarP | 0.906 | 0.571 |
| hypoxia_3wks | 1.611 | -0.937 |
| hypoxia_6wks | 2.7 | 3.548 |
| glycerol | 1.104 | 1.556 |
| cholesterol | -0.098 | -0.145 |
| AJ | 0.541 | 0.585 |
| Bibs02 | 0.115 | 0.717 |
| Bibs02c | 0.258 | 2.877 |
| BL6 | 2.934 | 2.544 |
| BL6a | 4.475 | 3.946 |
| BXD01 | 3.241 | 4.224 |
| BXD010 | 3.787 | 4.186 |
| BXD011 | 5.572 | 6.0 |
| BXD03 | 3.365 | 4.026 |
| BXD04 | 2.343 | 3.598 |
| BXD05 | 3.473 | 4.7 |
| BXD06 | 3.983 | 5.627 |
| BXD07 | 3.042 | 4.784 |
| BXD08 | 3.65 | 5.896 |
| BXD09 | 4.687 | 4.223 |
| CAST | -0.501 | -0.23 |
| CCcont | 2.452 | 5.608 |
| DS01 | -0.926 | -0.236 |
| DS02 | -0.852 | -0.217 |
| DS04 | 2.503 | 2.617 |
| DS0c | 0.616 | -0.217 |
| GP01 | 3.843 | 6.0 |
| GP02 | 1.738 | 3.274 |
| GP0c | 3.849 | 6.0 |
| NOD | -0.151 | 0.0 |
| NZO | -0.433 | -0.199 |
| PWK | -0.274 | 0.342 |
| H37Rv_KO_CtpC | 1.177 | 4.153 |
| H37Rv_KO_CtpD | 1.634 | 1.805 |
| H37Rv_KO_Rv1272 | 3.492 | 4.035 |
| H37Rv_KO_SugABC | 4.142 | 1.362 |
| H37Rv_KO_MbtN | 2.344 | 6.0 |
| Trans05 | 4.016 | 4.713 |
| macrophage_unactivated | 0.063 | -3.595 |
| IL1 | 0.291 | 0.297 |
| Rapamycin | 1.019 | -0.706 |
| Tcell | 2.255 | -0.124 |
| GMCSF | -0.573 | -3.126 |
| IFNab | 0.599 | -0.883 |
| IFNg | -1.227 | -4.153 |
| IFNg_GMCSF1 | -0.61 | -5.477 |
| Rv1432_day32 | 5.592 | -0.98 |
| Rv1565c_day32 | 0.458 | -1.21 |
| secA2_input | 0.321 | 0.424 |
| delta_Rv3594 | 1.42 | 1.768 |
| delta_Rv3717 | 3.259 | 3.284 |
| delta_Rv3811 | 0.932 | 1.646 |
| delta_Rv0954 | -1.765 | -2.158 |
| PonA1 | -1.855 | -6.0 |
| EccD1_KO | -2.072 | -6.0 |
| EspI_KO | -3.274 | -6.0 |
| PE35_KO | -1.613 | -6.0 |
| PPE68_KO | -1.261 | -6.0 |
| glycerol2 | -3.636 | -1.684 |
| lignocerate | -2.568 | -1.464 |
| oleate | -3.374 | -1.167 |
| phosphatidylcholine | -3.892 | -1.683 |
| acetate | -1.584 | -1.561 |
| glucAc | -0.723 | -0.451 |
| Rv0950ko | -0.874 | -3.98 |
| Rv1096ko | -1.384 | -3.906 |
| Rv3684ko | 1.952 | -1.628 |
| delta_otsA_trehalose | -0.519 | -0.595 |