Top 10 genes with highest correlation to Rv3024c/trmU:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3419c/gcp | (cc=0.7054) | info on Rv3419c/gcp |
| Rv1712/cmk | (cc=0.6522) | info on Rv1712/cmk |
| Rv1239c/corA | (cc=0.6303) | info on Rv1239c/corA |
| Rv3210c/- | (cc=0.6189) | info on Rv3210c/- |
| Rv3719/- | (cc=0.6167) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6001) | info on Rv1633/uvrB |
| Rv0642c/mmaA4 | (cc=0.5985) | info on Rv0642c/mmaA4 |
| Rv2842c/- | (cc=0.5983) | info on Rv2842c/- |
| Rv3218/- | (cc=0.595) | info on Rv3218/- |
| Rv0949/uvrD1 | (cc=0.5854) | info on Rv0949/uvrD1 |
Correlation of Rv3024c/trmU with Rv3719/-
Normalized LFCs for Rv3024c/trmU:
(description and provenance of datasets)
| Rv3024c/trmU | Rv3719/- | |
| Fe_supp_jason_reseq | 1.61 | 0.281 |
| low_pH_jason_reseq | -0.211 | -1.031 |
| NO_jason_reseq | 3.071 | 2.714 |
| B6_jason_reseq | 0.209 | 0.779 |
| MHCII_jason_reseq | -1.671 | -0.513 |
| Isoniazid02 | 0.0 | 0.111 |
| Rifampicin4 | 0.0 | -2.97 |
| Ethambutol3 | 0.0 | 0.66 |
| Meropenem3 | 0.0 | -0.22 |
| Vancomycin16 | 0.0 | -1.045 |
| Rv2680_day32 | -0.161 | -0.239 |
| H37Rv_KO_MarP | -1.197 | -1.218 |
| hypoxia_3wks | -1.782 | -4.685 |
| hypoxia_6wks | -1.222 | -2.76 |
| glycerol | 0.0 | -1.596 |
| cholesterol | 0.0 | -0.598 |
| AJ | 0.0 | -0.923 |
| Bibs02 | 0.0 | 0.221 |
| Bibs02c | 0.0 | 0.13 |
| BL6 | 1.346 | 0.4 |
| BL6a | 1.633 | 1.538 |
| BXD01 | 2.369 | 1.149 |
| BXD010 | 1.227 | 1.367 |
| BXD011 | 2.293 | 2.597 |
| BXD03 | 1.849 | 0.935 |
| BXD04 | 3.721 | 1.859 |
| BXD05 | 2.084 | 1.535 |
| BXD06 | 2.098 | 1.736 |
| BXD07 | 1.541 | 1.765 |
| BXD08 | 2.027 | 1.498 |
| BXD09 | 1.286 | 1.531 |
| CAST | 0.23 | -0.879 |
| CCcont | 1.606 | 1.196 |
| DS01 | 0.0 | -0.471 |
| DS02 | 0.0 | 0.323 |
| DS04 | 0.822 | -0.569 |
| DS0c | 0.0 | -0.762 |
| GP01 | 0.0 | 1.224 |
| GP02 | 0.0 | 0.272 |
| GP0c | 0.721 | 1.206 |
| NOD | 0.0 | -0.789 |
| NZO | 0.0 | -0.824 |
| PWK | 0.196 | 0.398 |
| H37Rv_KO_CtpC | 1.808 | 0.052 |
| H37Rv_KO_CtpD | 1.409 | -0.252 |
| H37Rv_KO_Rv1272 | 0.387 | -0.015 |
| H37Rv_KO_SugABC | 0.272 | 0.301 |
| H37Rv_KO_MbtN | 2.842 | 0.321 |
| Trans05 | 0.249 | 0.974 |
| macrophage_unactivated | -1.531 | -0.357 |
| IL1 | -1.163 | 0.549 |
| Rapamycin | -1.795 | 0.675 |
| Tcell | -0.228 | -0.13 |
| GMCSF | -2.131 | -0.269 |
| IFNab | 0.0 | -0.245 |
| IFNg | -1.849 | -2.32 |
| IFNg_GMCSF1 | -1.524 | -1.2 |
| Rv1432_day32 | -2.351 | -1.248 |
| Rv1565c_day32 | -0.599 | -2.203 |
| secA2_input | 1.993 | 0.542 |
| delta_Rv3594 | 0.659 | -0.566 |
| delta_Rv3717 | 3.088 | 0.121 |
| delta_Rv3811 | 1.24 | -0.604 |
| delta_Rv0954 | -2.089 | -0.516 |
| PonA1 | -1.657 | -0.944 |
| EccD1_KO | 1.194 | -0.799 |
| EspI_KO | -2.102 | -0.761 |
| PE35_KO | -3.039 | -0.16 |
| PPE68_KO | -2.582 | -0.65 |
| glycerol2 | -2.163 | -0.083 |
| lignocerate | -2.034 | -0.307 |
| oleate | -2.562 | -1.337 |
| phosphatidylcholine | -2.162 | -0.779 |
| acetate | -0.904 | -0.199 |
| glucAc | -0.991 | 0.0 |
| Rv0950ko | 1.366 | 0.914 |
| Rv1096ko | 2.657 | 0.54 |
| Rv3684ko | 2.607 | 1.533 |
| delta_otsA_trehalose | 2.212 | 1.228 |