Top 10 genes with highest correlation to Rv3024c/trmU:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3419c/gcp | (cc=0.7054) | info on Rv3419c/gcp |
| Rv1712/cmk | (cc=0.6522) | info on Rv1712/cmk |
| Rv1239c/corA | (cc=0.6303) | info on Rv1239c/corA |
| Rv3210c/- | (cc=0.6189) | info on Rv3210c/- |
| Rv3719/- | (cc=0.6167) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6001) | info on Rv1633/uvrB |
| Rv0642c/mmaA4 | (cc=0.5985) | info on Rv0642c/mmaA4 |
| Rv2842c/- | (cc=0.5983) | info on Rv2842c/- |
| Rv3218/- | (cc=0.595) | info on Rv3218/- |
| Rv0949/uvrD1 | (cc=0.5854) | info on Rv0949/uvrD1 |
Correlation of Rv3024c/trmU with Rv3210c/-
Normalized LFCs for Rv3024c/trmU:
(description and provenance of datasets)
| Rv3024c/trmU | Rv3210c/- | |
| Fe_supp_jason_reseq | 1.61 | 2.062 |
| low_pH_jason_reseq | -0.211 | -3.853 |
| NO_jason_reseq | 3.071 | -2.056 |
| B6_jason_reseq | 0.209 | -1.674 |
| MHCII_jason_reseq | -1.671 | -2.452 |
| Isoniazid02 | 0.0 | -0.351 |
| Rifampicin4 | 0.0 | -0.311 |
| Ethambutol3 | 0.0 | 0.0 |
| Meropenem3 | 0.0 | 0.0 |
| Vancomycin16 | 0.0 | -0.305 |
| Rv2680_day32 | -0.161 | 0.617 |
| H37Rv_KO_MarP | -1.197 | -3.844 |
| hypoxia_3wks | -1.782 | -5.383 |
| hypoxia_6wks | -1.222 | -2.533 |
| glycerol | 0.0 | -0.709 |
| cholesterol | 0.0 | -0.509 |
| AJ | 0.0 | -0.18 |
| Bibs02 | 0.0 | 0.132 |
| Bibs02c | 0.0 | -0.336 |
| BL6 | 1.346 | 2.786 |
| BL6a | 1.633 | 3.965 |
| BXD01 | 2.369 | 4.097 |
| BXD010 | 1.227 | 4.494 |
| BXD011 | 2.293 | 4.043 |
| BXD03 | 1.849 | 2.532 |
| BXD04 | 3.721 | 4.283 |
| BXD05 | 2.084 | 3.297 |
| BXD06 | 2.098 | 4.797 |
| BXD07 | 1.541 | 4.33 |
| BXD08 | 2.027 | 4.103 |
| BXD09 | 1.286 | 4.378 |
| CAST | 0.23 | -0.809 |
| CCcont | 1.606 | 4.389 |
| DS01 | 0.0 | 0.0 |
| DS02 | 0.0 | -0.548 |
| DS04 | 0.822 | 1.97 |
| DS0c | 0.0 | -0.168 |
| GP01 | 0.0 | -0.077 |
| GP02 | 0.0 | 0.116 |
| GP0c | 0.721 | 1.73 |
| NOD | 0.0 | -0.789 |
| NZO | 0.0 | -0.701 |
| PWK | 0.196 | -0.689 |
| H37Rv_KO_CtpC | 1.808 | 1.944 |
| H37Rv_KO_CtpD | 1.409 | 1.545 |
| H37Rv_KO_Rv1272 | 0.387 | 2.512 |
| H37Rv_KO_SugABC | 0.272 | 3.415 |
| H37Rv_KO_MbtN | 2.842 | 5.206 |
| Trans05 | 0.249 | 3.053 |
| macrophage_unactivated | -1.531 | -0.716 |
| IL1 | -1.163 | 0.341 |
| Rapamycin | -1.795 | 0.0 |
| Tcell | -0.228 | -1.619 |
| GMCSF | -2.131 | 0.721 |
| IFNab | 0.0 | 2.283 |
| IFNg | -1.849 | 1.109 |
| IFNg_GMCSF1 | -1.524 | -0.396 |
| Rv1432_day32 | -2.351 | -1.71 |
| Rv1565c_day32 | -0.599 | -3.884 |
| secA2_input | 1.993 | 1.565 |
| delta_Rv3594 | 0.659 | 0.153 |
| delta_Rv3717 | 3.088 | 0.946 |
| delta_Rv3811 | 1.24 | 0.913 |
| delta_Rv0954 | -2.089 | -3.66 |
| PonA1 | -1.657 | -5.488 |
| EccD1_KO | 1.194 | -2.457 |
| EspI_KO | -2.102 | -2.073 |
| PE35_KO | -3.039 | -3.104 |
| PPE68_KO | -2.582 | -3.161 |
| glycerol2 | -2.163 | 0.82 |
| lignocerate | -2.034 | 0.0 |
| oleate | -2.562 | 0.0 |
| phosphatidylcholine | -2.162 | 0.0 |
| acetate | -0.904 | 0.0 |
| glucAc | -0.991 | 0.392 |
| Rv0950ko | 1.366 | -0.214 |
| Rv1096ko | 2.657 | 0.178 |
| Rv3684ko | 2.607 | 0.635 |
| delta_otsA_trehalose | 2.212 | 0.0 |