Top 10 genes with highest correlation to Rv3024c/trmU:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3419c/gcp | (cc=0.7054) | info on Rv3419c/gcp |
| Rv1712/cmk | (cc=0.6522) | info on Rv1712/cmk |
| Rv1239c/corA | (cc=0.6303) | info on Rv1239c/corA |
| Rv3210c/- | (cc=0.6189) | info on Rv3210c/- |
| Rv3719/- | (cc=0.6167) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6001) | info on Rv1633/uvrB |
| Rv0642c/mmaA4 | (cc=0.5985) | info on Rv0642c/mmaA4 |
| Rv2842c/- | (cc=0.5983) | info on Rv2842c/- |
| Rv3218/- | (cc=0.595) | info on Rv3218/- |
| Rv0949/uvrD1 | (cc=0.5854) | info on Rv0949/uvrD1 |
Correlation of Rv3024c/trmU with Rv2842c/-
Normalized LFCs for Rv3024c/trmU:
(description and provenance of datasets)
| Rv3024c/trmU | Rv2842c/- | |
| Fe_supp_jason_reseq | 1.61 | -3.443 |
| low_pH_jason_reseq | -0.211 | 1.691 |
| NO_jason_reseq | 3.071 | 1.486 |
| B6_jason_reseq | 0.209 | -1.81 |
| MHCII_jason_reseq | -1.671 | -2.409 |
| Isoniazid02 | 0.0 | 0.156 |
| Rifampicin4 | 0.0 | 1.27 |
| Ethambutol3 | 0.0 | 1.282 |
| Meropenem3 | 0.0 | -0.289 |
| Vancomycin16 | 0.0 | 1.027 |
| Rv2680_day32 | -0.161 | 1.583 |
| H37Rv_KO_MarP | -1.197 | 0.563 |
| hypoxia_3wks | -1.782 | -1.132 |
| hypoxia_6wks | -1.222 | -1.879 |
| glycerol | 0.0 | -0.184 |
| cholesterol | 0.0 | -0.132 |
| AJ | 0.0 | -0.442 |
| Bibs02 | 0.0 | -0.348 |
| Bibs02c | 0.0 | -0.399 |
| BL6 | 1.346 | 2.496 |
| BL6a | 1.633 | 3.075 |
| BXD01 | 2.369 | 2.362 |
| BXD010 | 1.227 | 2.261 |
| BXD011 | 2.293 | 2.526 |
| BXD03 | 1.849 | 2.982 |
| BXD04 | 3.721 | 1.383 |
| BXD05 | 2.084 | 2.834 |
| BXD06 | 2.098 | 3.053 |
| BXD07 | 1.541 | 2.177 |
| BXD08 | 2.027 | 3.592 |
| BXD09 | 1.286 | 1.44 |
| CAST | 0.23 | 1.458 |
| CCcont | 1.606 | 2.376 |
| DS01 | 0.0 | -0.216 |
| DS02 | 0.0 | 0.0 |
| DS04 | 0.822 | 0.707 |
| DS0c | 0.0 | -0.413 |
| GP01 | 0.0 | -0.188 |
| GP02 | 0.0 | -0.159 |
| GP0c | 0.721 | -0.248 |
| NOD | 0.0 | -0.205 |
| NZO | 0.0 | -0.38 |
| PWK | 0.196 | -0.179 |
| H37Rv_KO_CtpC | 1.808 | 1.957 |
| H37Rv_KO_CtpD | 1.409 | 0.204 |
| H37Rv_KO_Rv1272 | 0.387 | -0.269 |
| H37Rv_KO_SugABC | 0.272 | 2.45 |
| H37Rv_KO_MbtN | 2.842 | 0.0 |
| Trans05 | 0.249 | 1.296 |
| macrophage_unactivated | -1.531 | -2.14 |
| IL1 | -1.163 | -2.791 |
| Rapamycin | -1.795 | -1.936 |
| Tcell | -0.228 | -0.857 |
| GMCSF | -2.131 | -2.485 |
| IFNab | 0.0 | -0.381 |
| IFNg | -1.849 | -1.446 |
| IFNg_GMCSF1 | -1.524 | -2.608 |
| Rv1432_day32 | -2.351 | 0.0 |
| Rv1565c_day32 | -0.599 | -0.415 |
| secA2_input | 1.993 | 1.349 |
| delta_Rv3594 | 0.659 | 1.869 |
| delta_Rv3717 | 3.088 | 2.815 |
| delta_Rv3811 | 1.24 | 3.098 |
| delta_Rv0954 | -2.089 | -1.383 |
| PonA1 | -1.657 | -0.799 |
| EccD1_KO | 1.194 | 2.144 |
| EspI_KO | -2.102 | 2.997 |
| PE35_KO | -3.039 | -1.415 |
| PPE68_KO | -2.582 | 0.47 |
| glycerol2 | -2.163 | -0.82 |
| lignocerate | -2.034 | 0.185 |
| oleate | -2.562 | -1.202 |
| phosphatidylcholine | -2.162 | -0.508 |
| acetate | -0.904 | 1.303 |
| glucAc | -0.991 | 0.762 |
| Rv0950ko | 1.366 | -0.482 |
| Rv1096ko | 2.657 | 0.926 |
| Rv3684ko | 2.607 | 2.607 |
| delta_otsA_trehalose | 2.212 | 0.239 |