Top 10 genes with highest correlation to Rv3024c/trmU:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3419c/gcp | (cc=0.7054) | info on Rv3419c/gcp |
| Rv1712/cmk | (cc=0.6522) | info on Rv1712/cmk |
| Rv1239c/corA | (cc=0.6303) | info on Rv1239c/corA |
| Rv3210c/- | (cc=0.6189) | info on Rv3210c/- |
| Rv3719/- | (cc=0.6167) | info on Rv3719/- |
| Rv1633/uvrB | (cc=0.6001) | info on Rv1633/uvrB |
| Rv0642c/mmaA4 | (cc=0.5985) | info on Rv0642c/mmaA4 |
| Rv2842c/- | (cc=0.5983) | info on Rv2842c/- |
| Rv3218/- | (cc=0.595) | info on Rv3218/- |
| Rv0949/uvrD1 | (cc=0.5854) | info on Rv0949/uvrD1 |
Correlation of Rv3024c/trmU with Rv3419c/gcp
Normalized LFCs for Rv3024c/trmU:
(description and provenance of datasets)
| Rv3024c/trmU | Rv3419c/gcp | |
| Fe_supp_jason_reseq | 1.61 | -1.455 |
| low_pH_jason_reseq | -0.211 | 0.353 |
| NO_jason_reseq | 3.071 | 3.179 |
| B6_jason_reseq | 0.209 | 0.578 |
| MHCII_jason_reseq | -1.671 | -1.332 |
| Isoniazid02 | 0.0 | -1.685 |
| Rifampicin4 | 0.0 | 0.845 |
| Ethambutol3 | 0.0 | 1.389 |
| Meropenem3 | 0.0 | 0.0 |
| Vancomycin16 | 0.0 | 0.13 |
| Rv2680_day32 | -0.161 | -0.811 |
| H37Rv_KO_MarP | -1.197 | -0.44 |
| hypoxia_3wks | -1.782 | 0.0 |
| hypoxia_6wks | -1.222 | 0.0 |
| glycerol | 0.0 | -0.083 |
| cholesterol | 0.0 | -1.447 |
| AJ | 0.0 | 1.536 |
| Bibs02 | 0.0 | -0.703 |
| Bibs02c | 0.0 | -0.467 |
| BL6 | 1.346 | 2.916 |
| BL6a | 1.633 | 1.474 |
| BXD01 | 2.369 | 2.919 |
| BXD010 | 1.227 | 2.677 |
| BXD011 | 2.293 | 3.476 |
| BXD03 | 1.849 | 3.152 |
| BXD04 | 3.721 | 3.199 |
| BXD05 | 2.084 | 2.698 |
| BXD06 | 2.098 | 3.834 |
| BXD07 | 1.541 | 2.848 |
| BXD08 | 2.027 | 3.06 |
| BXD09 | 1.286 | 2.295 |
| CAST | 0.23 | 2.279 |
| CCcont | 1.606 | 2.265 |
| DS01 | 0.0 | -0.775 |
| DS02 | 0.0 | -0.181 |
| DS04 | 0.822 | 0.873 |
| DS0c | 0.0 | -0.278 |
| GP01 | 0.0 | -0.888 |
| GP02 | 0.0 | -0.831 |
| GP0c | 0.721 | 0.775 |
| NOD | 0.0 | 1.01 |
| NZO | 0.0 | 1.777 |
| PWK | 0.196 | 3.711 |
| H37Rv_KO_CtpC | 1.808 | 1.272 |
| H37Rv_KO_CtpD | 1.409 | 2.089 |
| H37Rv_KO_Rv1272 | 0.387 | 0.993 |
| H37Rv_KO_SugABC | 0.272 | 1.521 |
| H37Rv_KO_MbtN | 2.842 | 1.977 |
| Trans05 | 0.249 | 1.517 |
| macrophage_unactivated | -1.531 | -1.045 |
| IL1 | -1.163 | -0.715 |
| Rapamycin | -1.795 | -1.795 |
| Tcell | -0.228 | 0.349 |
| GMCSF | -2.131 | -1.127 |
| IFNab | 0.0 | 0.813 |
| IFNg | -1.849 | -1.141 |
| IFNg_GMCSF1 | -1.524 | -1.191 |
| Rv1432_day32 | -2.351 | -0.395 |
| Rv1565c_day32 | -0.599 | -0.262 |
| secA2_input | 1.993 | -0.163 |
| delta_Rv3594 | 0.659 | 0.598 |
| delta_Rv3717 | 3.088 | 0.992 |
| delta_Rv3811 | 1.24 | 0.949 |
| delta_Rv0954 | -2.089 | -0.774 |
| PonA1 | -1.657 | 0.121 |
| EccD1_KO | 1.194 | 0.368 |
| EspI_KO | -2.102 | -1.229 |
| PE35_KO | -3.039 | -0.353 |
| PPE68_KO | -2.582 | -0.307 |
| glycerol2 | -2.163 | -1.808 |
| lignocerate | -2.034 | -1.93 |
| oleate | -2.562 | -1.829 |
| phosphatidylcholine | -2.162 | -2.043 |
| acetate | -0.904 | -1.453 |
| glucAc | -0.991 | 1.045 |
| Rv0950ko | 1.366 | 0.419 |
| Rv1096ko | 2.657 | -0.259 |
| Rv3684ko | 2.607 | 1.15 |
| delta_otsA_trehalose | 2.212 | 0.965 |