Top 10 genes with highest correlation to Rv2959c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0888/- | (cc=0.5389) | info on Rv0888/- |
| Rv1523/- | (cc=0.4859) | info on Rv1523/- |
| Rv3125c/PPE49 | (cc=0.477) | info on Rv3125c/PPE49 |
| Rv2107/PE22 | (cc=0.4696) | info on Rv2107/PE22 |
| Rv0109/PE_PGRS1 | (cc=0.4534) | info on Rv0109/PE_PGRS1 |
| Rv2338c/moeW | (cc=0.4521) | info on Rv2338c/moeW |
| Rv3116/moeB2 | (cc=0.4454) | info on Rv3116/moeB2 |
| Rv2730/- | (cc=0.4444) | info on Rv2730/- |
| Rv2993c/- | (cc=0.4435) | info on Rv2993c/- |
| Rv2954c/- | (cc=0.4238) | info on Rv2954c/- |
Correlation of Rv2959c/- with Rv3116/moeB2
Normalized LFCs for Rv2959c/-:
(description and provenance of datasets)
| Rv2959c/- | Rv3116/moeB2 | |
| Fe_supp_jason_reseq | 0.481 | 0.753 |
| low_pH_jason_reseq | -0.709 | -0.539 |
| NO_jason_reseq | -0.559 | -0.483 |
| B6_jason_reseq | -0.96 | 0.435 |
| MHCII_jason_reseq | -0.614 | 0.474 |
| Isoniazid02 | -1.796 | -1.141 |
| Rifampicin4 | 0.344 | -0.051 |
| Ethambutol3 | 1.56 | -0.544 |
| Meropenem3 | -1.445 | -1.06 |
| Vancomycin16 | -0.512 | -0.332 |
| Rv2680_day32 | -0.348 | -0.749 |
| H37Rv_KO_MarP | 0.24 | -0.322 |
| hypoxia_3wks | 0.606 | 0.279 |
| hypoxia_6wks | -0.355 | -0.184 |
| glycerol | -1.249 | -0.707 |
| cholesterol | -0.535 | -0.491 |
| AJ | 0.425 | -0.235 |
| Bibs02 | 0.0 | -0.445 |
| Bibs02c | -0.465 | 0.099 |
| BL6 | 0.849 | 0.681 |
| BL6a | 0.911 | 0.763 |
| BXD01 | 0.262 | 0.64 |
| BXD010 | 1.063 | 0.848 |
| BXD011 | 0.511 | 1.007 |
| BXD03 | 0.436 | 0.782 |
| BXD04 | -0.028 | 0.983 |
| BXD05 | 1.019 | 1.152 |
| BXD06 | 0.409 | 0.642 |
| BXD07 | 0.03 | 0.666 |
| BXD08 | 0.029 | 0.673 |
| BXD09 | 1.152 | 0.712 |
| CAST | -0.158 | -0.057 |
| CCcont | 0.158 | 0.584 |
| DS01 | -0.108 | 0.435 |
| DS02 | 0.592 | 0.777 |
| DS04 | 0.084 | 0.555 |
| DS0c | -0.801 | 0.383 |
| GP01 | 0.043 | 0.277 |
| GP02 | -0.391 | 0.652 |
| GP0c | -0.325 | 0.307 |
| NOD | 0.049 | -0.111 |
| NZO | 0.087 | -0.256 |
| PWK | 0.043 | -0.287 |
| H37Rv_KO_CtpC | -0.879 | 0.608 |
| H37Rv_KO_CtpD | 0.874 | 0.987 |
| H37Rv_KO_Rv1272 | 0.82 | 0.52 |
| H37Rv_KO_SugABC | -0.167 | 0.234 |
| H37Rv_KO_MbtN | -0.381 | 0.791 |
| Trans05 | -0.327 | 0.687 |
| macrophage_unactivated | 0.24 | 0.275 |
| IL1 | -0.828 | -0.133 |
| Rapamycin | -1.562 | -0.356 |
| Tcell | -0.681 | 0.094 |
| GMCSF | -0.995 | 0.391 |
| IFNab | -0.989 | -0.16 |
| IFNg | -0.214 | -0.374 |
| IFNg_GMCSF1 | -0.383 | 0.091 |
| Rv1432_day32 | 0.462 | -0.168 |
| Rv1565c_day32 | 0.351 | -0.158 |
| secA2_input | -0.941 | -0.704 |
| delta_Rv3594 | 0.797 | 0.265 |
| delta_Rv3717 | 1.258 | 0.036 |
| delta_Rv3811 | 0.775 | -0.18 |
| delta_Rv0954 | 1.521 | 0.224 |
| PonA1 | 1.293 | 0.066 |
| EccD1_KO | 0.49 | -0.22 |
| EspI_KO | -0.679 | -0.026 |
| PE35_KO | 0.35 | -0.222 |
| PPE68_KO | -0.31 | -0.029 |
| glycerol2 | 0.101 | 0.252 |
| lignocerate | -0.189 | -0.142 |
| oleate | 0.571 | 0.885 |
| phosphatidylcholine | 0.64 | 0.293 |
| acetate | -0.125 | -0.61 |
| glucAc | -0.132 | -1.047 |
| Rv0950ko | 0.721 | -0.072 |
| Rv1096ko | -0.971 | -0.977 |
| Rv3684ko | -0.291 | -0.603 |
| delta_otsA_trehalose | -0.588 | -0.223 |