Top 10 genes with highest correlation to Rv2959c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0888/- | (cc=0.5389) | info on Rv0888/- |
| Rv1523/- | (cc=0.4859) | info on Rv1523/- |
| Rv3125c/PPE49 | (cc=0.477) | info on Rv3125c/PPE49 |
| Rv2107/PE22 | (cc=0.4696) | info on Rv2107/PE22 |
| Rv0109/PE_PGRS1 | (cc=0.4534) | info on Rv0109/PE_PGRS1 |
| Rv2338c/moeW | (cc=0.4521) | info on Rv2338c/moeW |
| Rv3116/moeB2 | (cc=0.4454) | info on Rv3116/moeB2 |
| Rv2730/- | (cc=0.4444) | info on Rv2730/- |
| Rv2993c/- | (cc=0.4435) | info on Rv2993c/- |
| Rv2954c/- | (cc=0.4238) | info on Rv2954c/- |
Correlation of Rv2959c/- with Rv2107/PE22
Normalized LFCs for Rv2959c/-:
(description and provenance of datasets)
| Rv2959c/- | Rv2107/PE22 | |
| Fe_supp_jason_reseq | 0.481 | -0.93 |
| low_pH_jason_reseq | -0.709 | -0.472 |
| NO_jason_reseq | -0.559 | -0.858 |
| B6_jason_reseq | -0.96 | -1.443 |
| MHCII_jason_reseq | -0.614 | -1.253 |
| Isoniazid02 | -1.796 | -0.025 |
| Rifampicin4 | 0.344 | -0.401 |
| Ethambutol3 | 1.56 | 0.938 |
| Meropenem3 | -1.445 | -1.12 |
| Vancomycin16 | -0.512 | -0.671 |
| Rv2680_day32 | -0.348 | -1.021 |
| H37Rv_KO_MarP | 0.24 | -0.358 |
| hypoxia_3wks | 0.606 | 0.275 |
| hypoxia_6wks | -0.355 | 1.036 |
| glycerol | -1.249 | -1.491 |
| cholesterol | -0.535 | -1.491 |
| AJ | 0.425 | 2.279 |
| Bibs02 | 0.0 | 0.568 |
| Bibs02c | -0.465 | 1.285 |
| BL6 | 0.849 | 1.493 |
| BL6a | 0.911 | 1.277 |
| BXD01 | 0.262 | 0.869 |
| BXD010 | 1.063 | 1.557 |
| BXD011 | 0.511 | 1.128 |
| BXD03 | 0.436 | 0.567 |
| BXD04 | -0.028 | 1.035 |
| BXD05 | 1.019 | 1.159 |
| BXD06 | 0.409 | 1.482 |
| BXD07 | 0.03 | 0.903 |
| BXD08 | 0.029 | 1.153 |
| BXD09 | 1.152 | 1.253 |
| CAST | -0.158 | 0.809 |
| CCcont | 0.158 | 0.081 |
| DS01 | -0.108 | 0.76 |
| DS02 | 0.592 | 0.06 |
| DS04 | 0.084 | 2.183 |
| DS0c | -0.801 | -0.061 |
| GP01 | 0.043 | 1.842 |
| GP02 | -0.391 | 0.492 |
| GP0c | -0.325 | 0.627 |
| NOD | 0.049 | -0.447 |
| NZO | 0.087 | -0.236 |
| PWK | 0.043 | -0.171 |
| H37Rv_KO_CtpC | -0.879 | 0.812 |
| H37Rv_KO_CtpD | 0.874 | 0.354 |
| H37Rv_KO_Rv1272 | 0.82 | 1.809 |
| H37Rv_KO_SugABC | -0.167 | 1.565 |
| H37Rv_KO_MbtN | -0.381 | 0.451 |
| Trans05 | -0.327 | 1.754 |
| macrophage_unactivated | 0.24 | -0.41 |
| IL1 | -0.828 | -0.979 |
| Rapamycin | -1.562 | -1.228 |
| Tcell | -0.681 | -1.235 |
| GMCSF | -0.995 | -0.768 |
| IFNab | -0.989 | -1.563 |
| IFNg | -0.214 | 0.241 |
| IFNg_GMCSF1 | -0.383 | -0.914 |
| Rv1432_day32 | 0.462 | 0.258 |
| Rv1565c_day32 | 0.351 | 1.106 |
| secA2_input | -0.941 | 0.091 |
| delta_Rv3594 | 0.797 | 1.231 |
| delta_Rv3717 | 1.258 | -0.091 |
| delta_Rv3811 | 0.775 | 0.0 |
| delta_Rv0954 | 1.521 | 0.253 |
| PonA1 | 1.293 | -1.17 |
| EccD1_KO | 0.49 | 0.118 |
| EspI_KO | -0.679 | 0.516 |
| PE35_KO | 0.35 | 0.172 |
| PPE68_KO | -0.31 | 0.611 |
| glycerol2 | 0.101 | 0.083 |
| lignocerate | -0.189 | -0.203 |
| oleate | 0.571 | 0.567 |
| phosphatidylcholine | 0.64 | 0.482 |
| acetate | -0.125 | -0.49 |
| glucAc | -0.132 | -1.046 |
| Rv0950ko | 0.721 | 0.621 |
| Rv1096ko | -0.971 | -0.793 |
| Rv3684ko | -0.291 | -0.462 |
| delta_otsA_trehalose | -0.588 | -0.173 |