Top 10 genes with highest correlation to Rv2959c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0888/- | (cc=0.5389) | info on Rv0888/- |
| Rv1523/- | (cc=0.4859) | info on Rv1523/- |
| Rv3125c/PPE49 | (cc=0.477) | info on Rv3125c/PPE49 |
| Rv2107/PE22 | (cc=0.4696) | info on Rv2107/PE22 |
| Rv0109/PE_PGRS1 | (cc=0.4534) | info on Rv0109/PE_PGRS1 |
| Rv2338c/moeW | (cc=0.4521) | info on Rv2338c/moeW |
| Rv3116/moeB2 | (cc=0.4454) | info on Rv3116/moeB2 |
| Rv2730/- | (cc=0.4444) | info on Rv2730/- |
| Rv2993c/- | (cc=0.4435) | info on Rv2993c/- |
| Rv2954c/- | (cc=0.4238) | info on Rv2954c/- |
Correlation of Rv2959c/- with Rv2954c/-
Normalized LFCs for Rv2959c/-:
(description and provenance of datasets)
| Rv2959c/- | Rv2954c/- | |
| Fe_supp_jason_reseq | 0.481 | 0.18 |
| low_pH_jason_reseq | -0.709 | -1.161 |
| NO_jason_reseq | -0.559 | -0.412 |
| B6_jason_reseq | -0.96 | -0.145 |
| MHCII_jason_reseq | -0.614 | -0.033 |
| Isoniazid02 | -1.796 | -0.723 |
| Rifampicin4 | 0.344 | 0.241 |
| Ethambutol3 | 1.56 | -0.405 |
| Meropenem3 | -1.445 | -0.68 |
| Vancomycin16 | -0.512 | -0.17 |
| Rv2680_day32 | -0.348 | 0.205 |
| H37Rv_KO_MarP | 0.24 | -0.069 |
| hypoxia_3wks | 0.606 | -0.104 |
| hypoxia_6wks | -0.355 | 0.052 |
| glycerol | -1.249 | 0.439 |
| cholesterol | -0.535 | -0.029 |
| AJ | 0.425 | -0.123 |
| Bibs02 | 0.0 | -0.449 |
| Bibs02c | -0.465 | -0.631 |
| BL6 | 0.849 | 0.216 |
| BL6a | 0.911 | 0.263 |
| BXD01 | 0.262 | 0.268 |
| BXD010 | 1.063 | 0.447 |
| BXD011 | 0.511 | 0.468 |
| BXD03 | 0.436 | 0.66 |
| BXD04 | -0.028 | 0.546 |
| BXD05 | 1.019 | 0.644 |
| BXD06 | 0.409 | 0.056 |
| BXD07 | 0.03 | 0.194 |
| BXD08 | 0.029 | -0.063 |
| BXD09 | 1.152 | 0.494 |
| CAST | -0.158 | -0.053 |
| CCcont | 0.158 | 0.171 |
| DS01 | -0.108 | -0.062 |
| DS02 | 0.592 | -0.169 |
| DS04 | 0.084 | 0.222 |
| DS0c | -0.801 | 0.368 |
| GP01 | 0.043 | 1.056 |
| GP02 | -0.391 | -0.374 |
| GP0c | -0.325 | -0.138 |
| NOD | 0.049 | 0.812 |
| NZO | 0.087 | 0.012 |
| PWK | 0.043 | 0.347 |
| H37Rv_KO_CtpC | -0.879 | -0.465 |
| H37Rv_KO_CtpD | 0.874 | 0.501 |
| H37Rv_KO_Rv1272 | 0.82 | 1.286 |
| H37Rv_KO_SugABC | -0.167 | 0.428 |
| H37Rv_KO_MbtN | -0.381 | 0.066 |
| Trans05 | -0.327 | 0.423 |
| macrophage_unactivated | 0.24 | -0.076 |
| IL1 | -0.828 | -0.641 |
| Rapamycin | -1.562 | 0.055 |
| Tcell | -0.681 | -0.394 |
| GMCSF | -0.995 | -0.05 |
| IFNab | -0.989 | -0.357 |
| IFNg | -0.214 | 0.206 |
| IFNg_GMCSF1 | -0.383 | 1.178 |
| Rv1432_day32 | 0.462 | 0.631 |
| Rv1565c_day32 | 0.351 | 0.605 |
| secA2_input | -0.941 | -0.775 |
| delta_Rv3594 | 0.797 | 0.083 |
| delta_Rv3717 | 1.258 | -0.186 |
| delta_Rv3811 | 0.775 | 0.311 |
| delta_Rv0954 | 1.521 | 0.075 |
| PonA1 | 1.293 | 0.5 |
| EccD1_KO | 0.49 | 0.234 |
| EspI_KO | -0.679 | 0.482 |
| PE35_KO | 0.35 | 0.846 |
| PPE68_KO | -0.31 | 0.419 |
| glycerol2 | 0.101 | 1.092 |
| lignocerate | -0.189 | 0.822 |
| oleate | 0.571 | 1.143 |
| phosphatidylcholine | 0.64 | 1.049 |
| acetate | -0.125 | 0.007 |
| glucAc | -0.132 | -0.026 |
| Rv0950ko | 0.721 | 0.223 |
| Rv1096ko | -0.971 | -0.63 |
| Rv3684ko | -0.291 | -0.082 |
| delta_otsA_trehalose | -0.588 | 0.216 |