Top 10 genes with highest correlation to Rv2959c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0888/- | (cc=0.5389) | info on Rv0888/- |
| Rv1523/- | (cc=0.4859) | info on Rv1523/- |
| Rv3125c/PPE49 | (cc=0.477) | info on Rv3125c/PPE49 |
| Rv2107/PE22 | (cc=0.4696) | info on Rv2107/PE22 |
| Rv0109/PE_PGRS1 | (cc=0.4534) | info on Rv0109/PE_PGRS1 |
| Rv2338c/moeW | (cc=0.4521) | info on Rv2338c/moeW |
| Rv3116/moeB2 | (cc=0.4454) | info on Rv3116/moeB2 |
| Rv2730/- | (cc=0.4444) | info on Rv2730/- |
| Rv2993c/- | (cc=0.4435) | info on Rv2993c/- |
| Rv2954c/- | (cc=0.4238) | info on Rv2954c/- |
Correlation of Rv2959c/- with Rv0109/PE_PGRS1
Normalized LFCs for Rv2959c/-:
(description and provenance of datasets)
| Rv2959c/- | Rv0109/PE_PGRS1 | |
| Fe_supp_jason_reseq | 0.481 | -1.609 |
| low_pH_jason_reseq | -0.709 | 0.646 |
| NO_jason_reseq | -0.559 | -0.541 |
| B6_jason_reseq | -0.96 | -1.364 |
| MHCII_jason_reseq | -0.614 | -0.516 |
| Isoniazid02 | -1.796 | -0.626 |
| Rifampicin4 | 0.344 | -0.181 |
| Ethambutol3 | 1.56 | -0.054 |
| Meropenem3 | -1.445 | 0.026 |
| Vancomycin16 | -0.512 | -0.239 |
| Rv2680_day32 | -0.348 | 0.271 |
| H37Rv_KO_MarP | 0.24 | -0.349 |
| hypoxia_3wks | 0.606 | -0.367 |
| hypoxia_6wks | -0.355 | -0.731 |
| glycerol | -1.249 | -1.001 |
| cholesterol | -0.535 | -0.034 |
| AJ | 0.425 | 0.156 |
| Bibs02 | 0.0 | -0.535 |
| Bibs02c | -0.465 | -0.1 |
| BL6 | 0.849 | 1.203 |
| BL6a | 0.911 | 0.663 |
| BXD01 | 0.262 | 1.074 |
| BXD010 | 1.063 | 0.882 |
| BXD011 | 0.511 | 1.237 |
| BXD03 | 0.436 | 0.407 |
| BXD04 | -0.028 | 0.711 |
| BXD05 | 1.019 | 1.095 |
| BXD06 | 0.409 | 0.675 |
| BXD07 | 0.03 | 1.294 |
| BXD08 | 0.029 | 0.533 |
| BXD09 | 1.152 | 0.789 |
| CAST | -0.158 | 0.205 |
| CCcont | 0.158 | 1.465 |
| DS01 | -0.108 | -0.229 |
| DS02 | 0.592 | 0.372 |
| DS04 | 0.084 | 0.131 |
| DS0c | -0.801 | -0.211 |
| GP01 | 0.043 | -0.787 |
| GP02 | -0.391 | -0.705 |
| GP0c | -0.325 | 0.345 |
| NOD | 0.049 | -0.107 |
| NZO | 0.087 | 0.668 |
| PWK | 0.043 | -0.142 |
| H37Rv_KO_CtpC | -0.879 | -0.038 |
| H37Rv_KO_CtpD | 0.874 | 0.778 |
| H37Rv_KO_Rv1272 | 0.82 | 1.344 |
| H37Rv_KO_SugABC | -0.167 | 0.857 |
| H37Rv_KO_MbtN | -0.381 | -0.211 |
| Trans05 | -0.327 | 1.68 |
| macrophage_unactivated | 0.24 | 0.429 |
| IL1 | -0.828 | 0.184 |
| Rapamycin | -1.562 | -0.098 |
| Tcell | -0.681 | -0.489 |
| GMCSF | -0.995 | -0.084 |
| IFNab | -0.989 | 0.048 |
| IFNg | -0.214 | 0.246 |
| IFNg_GMCSF1 | -0.383 | 0.776 |
| Rv1432_day32 | 0.462 | 1.119 |
| Rv1565c_day32 | 0.351 | 0.115 |
| secA2_input | -0.941 | -0.045 |
| delta_Rv3594 | 0.797 | 1.127 |
| delta_Rv3717 | 1.258 | 1.333 |
| delta_Rv3811 | 0.775 | 0.909 |
| delta_Rv0954 | 1.521 | 0.721 |
| PonA1 | 1.293 | 0.705 |
| EccD1_KO | 0.49 | 1.089 |
| EspI_KO | -0.679 | -0.53 |
| PE35_KO | 0.35 | -0.403 |
| PPE68_KO | -0.31 | -0.288 |
| glycerol2 | 0.101 | 0.82 |
| lignocerate | -0.189 | 0.872 |
| oleate | 0.571 | 0.048 |
| phosphatidylcholine | 0.64 | 0.471 |
| acetate | -0.125 | 0.934 |
| glucAc | -0.132 | 1.169 |
| Rv0950ko | 0.721 | 1.022 |
| Rv1096ko | -0.971 | 0.582 |
| Rv3684ko | -0.291 | 0.796 |
| delta_otsA_trehalose | -0.588 | 0.536 |