Top 10 genes with highest correlation to Rv2808/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3697c/vapC48 | (cc=0.5575) | info on Rv3697c/vapC48 |
| Rv2647/- | (cc=0.5553) | info on Rv2647/- |
| Rv1205/- | (cc=0.5379) | info on Rv1205/- |
| Rv3018c/PPE46 | (cc=0.5325) | info on Rv3018c/PPE46 |
| Rv1260/- | (cc=0.5176) | info on Rv1260/- |
| Rv1646/PE17 | (cc=0.5092) | info on Rv1646/PE17 |
| Rv1206/fadD6 | (cc=0.4987) | info on Rv1206/fadD6 |
| Rv0755c/PPE12 | (cc=0.4821) | info on Rv0755c/PPE12 |
| Rv0554/bpoC | (cc=0.469) | info on Rv0554/bpoC |
| Rv2941/fadD28 | (cc=0.4645) | info on Rv2941/fadD28 |
Correlation of Rv2808/- with Rv2647/-
Normalized LFCs for Rv2808/-:
(description and provenance of datasets)
| Rv2808/- | Rv2647/- | |
| Fe_supp_jason_reseq | 0.766 | -0.207 |
| low_pH_jason_reseq | -0.124 | 0.333 |
| NO_jason_reseq | 0.69 | 0.407 |
| B6_jason_reseq | 2.801 | -0.24 |
| MHCII_jason_reseq | 1.22 | 1.765 |
| Isoniazid02 | 0.0 | -0.519 |
| Rifampicin4 | 0.791 | 0.639 |
| Ethambutol3 | 0.427 | 0.0 |
| Meropenem3 | 0.444 | 0.264 |
| Vancomycin16 | 0.775 | 0.398 |
| Rv2680_day32 | -3.002 | -1.922 |
| H37Rv_KO_MarP | -0.114 | 1.187 |
| hypoxia_3wks | -0.825 | 0.431 |
| hypoxia_6wks | 0.023 | -1.324 |
| glycerol | -0.066 | -0.992 |
| cholesterol | 0.379 | -0.499 |
| AJ | 1.128 | 0.193 |
| Bibs02 | 0.642 | 0.242 |
| Bibs02c | -0.103 | 0.47 |
| BL6 | -0.255 | 0.574 |
| BL6a | -0.502 | 0.244 |
| BXD01 | 0.222 | 0.082 |
| BXD010 | 0.472 | -2.241 |
| BXD011 | 0.719 | -1.039 |
| BXD03 | 0.266 | -1.31 |
| BXD04 | -0.061 | -0.113 |
| BXD05 | -0.851 | -1.95 |
| BXD06 | 0.246 | -0.727 |
| BXD07 | 0.138 | -0.159 |
| BXD08 | 0.66 | 1.034 |
| BXD09 | -0.314 | -1.524 |
| CAST | 1.565 | 0.908 |
| CCcont | 0.244 | 0.016 |
| DS01 | 0.589 | 0.767 |
| DS02 | 1.175 | 0.581 |
| DS04 | 0.822 | -2.046 |
| DS0c | 0.848 | -0.652 |
| GP01 | -0.654 | -0.011 |
| GP02 | -0.764 | -1.364 |
| GP0c | -0.577 | -0.214 |
| NOD | 2.481 | 0.382 |
| NZO | 1.097 | -0.571 |
| PWK | 0.334 | 1.367 |
| H37Rv_KO_CtpC | 0.976 | 0.95 |
| H37Rv_KO_CtpD | -1.163 | -2.291 |
| H37Rv_KO_Rv1272 | 0.045 | -1.87 |
| H37Rv_KO_SugABC | -0.929 | -0.959 |
| H37Rv_KO_MbtN | 0.264 | -1.253 |
| Trans05 | -1.679 | -1.588 |
| macrophage_unactivated | -0.259 | -1.846 |
| IL1 | -3.168 | -3.028 |
| Rapamycin | -0.948 | -3.689 |
| Tcell | -0.404 | -2.333 |
| GMCSF | -1.853 | -3.303 |
| IFNab | -1.808 | -2.603 |
| IFNg | -2.638 | -2.616 |
| IFNg_GMCSF1 | -1.345 | -1.37 |
| Rv1432_day32 | -1.675 | -0.763 |
| Rv1565c_day32 | -1.139 | 0.58 |
| secA2_input | -0.504 | -0.576 |
| delta_Rv3594 | -0.066 | -0.642 |
| delta_Rv3717 | -1.057 | -0.505 |
| delta_Rv3811 | -1.034 | -1.222 |
| delta_Rv0954 | -1.495 | -0.444 |
| PonA1 | -2.308 | -0.726 |
| EccD1_KO | -0.927 | -1.092 |
| EspI_KO | -0.091 | -1.991 |
| PE35_KO | 0.359 | -0.362 |
| PPE68_KO | -0.544 | -0.128 |
| glycerol2 | -0.433 | 0.51 |
| lignocerate | 0.145 | 0.037 |
| oleate | -0.265 | 0.516 |
| phosphatidylcholine | 0.277 | 0.465 |
| acetate | -0.382 | -0.209 |
| glucAc | 0.088 | 0.158 |
| Rv0950ko | 0.084 | -0.488 |
| Rv1096ko | -0.262 | -0.133 |
| Rv3684ko | -0.481 | -0.95 |
| delta_otsA_trehalose | -2.072 | -2.038 |