Top 10 genes with highest correlation to Rv2808/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3697c/vapC48 | (cc=0.5575) | info on Rv3697c/vapC48 |
| Rv2647/- | (cc=0.5553) | info on Rv2647/- |
| Rv1205/- | (cc=0.5379) | info on Rv1205/- |
| Rv3018c/PPE46 | (cc=0.5325) | info on Rv3018c/PPE46 |
| Rv1260/- | (cc=0.5176) | info on Rv1260/- |
| Rv1646/PE17 | (cc=0.5092) | info on Rv1646/PE17 |
| Rv1206/fadD6 | (cc=0.4987) | info on Rv1206/fadD6 |
| Rv0755c/PPE12 | (cc=0.4821) | info on Rv0755c/PPE12 |
| Rv0554/bpoC | (cc=0.469) | info on Rv0554/bpoC |
| Rv2941/fadD28 | (cc=0.4645) | info on Rv2941/fadD28 |
Correlation of Rv2808/- with Rv1646/PE17
Normalized LFCs for Rv2808/-:
(description and provenance of datasets)
| Rv2808/- | Rv1646/PE17 | |
| Fe_supp_jason_reseq | 0.766 | 0.358 |
| low_pH_jason_reseq | -0.124 | -0.348 |
| NO_jason_reseq | 0.69 | 0.181 |
| B6_jason_reseq | 2.801 | 0.787 |
| MHCII_jason_reseq | 1.22 | 0.025 |
| Isoniazid02 | 0.0 | 0.661 |
| Rifampicin4 | 0.791 | 0.439 |
| Ethambutol3 | 0.427 | 0.48 |
| Meropenem3 | 0.444 | -0.279 |
| Vancomycin16 | 0.775 | -0.167 |
| Rv2680_day32 | -3.002 | 0.621 |
| H37Rv_KO_MarP | -0.114 | -0.195 |
| hypoxia_3wks | -0.825 | 0.267 |
| hypoxia_6wks | 0.023 | -0.654 |
| glycerol | -0.066 | 0.329 |
| cholesterol | 0.379 | 0.325 |
| AJ | 1.128 | 0.948 |
| Bibs02 | 0.642 | 0.13 |
| Bibs02c | -0.103 | 0.606 |
| BL6 | -0.255 | -0.783 |
| BL6a | -0.502 | 0.445 |
| BXD01 | 0.222 | 0.031 |
| BXD010 | 0.472 | -0.225 |
| BXD011 | 0.719 | -0.667 |
| BXD03 | 0.266 | -0.788 |
| BXD04 | -0.061 | 0.394 |
| BXD05 | -0.851 | -0.054 |
| BXD06 | 0.246 | -0.508 |
| BXD07 | 0.138 | -0.498 |
| BXD08 | 0.66 | 0.082 |
| BXD09 | -0.314 | -0.457 |
| CAST | 1.565 | 1.018 |
| CCcont | 0.244 | -0.333 |
| DS01 | 0.589 | 0.631 |
| DS02 | 1.175 | 0.597 |
| DS04 | 0.822 | 0.396 |
| DS0c | 0.848 | 1.196 |
| GP01 | -0.654 | 0.043 |
| GP02 | -0.764 | 0.312 |
| GP0c | -0.577 | 0.025 |
| NOD | 2.481 | 0.765 |
| NZO | 1.097 | 0.525 |
| PWK | 0.334 | 0.479 |
| H37Rv_KO_CtpC | 0.976 | 0.071 |
| H37Rv_KO_CtpD | -1.163 | -0.623 |
| H37Rv_KO_Rv1272 | 0.045 | -0.306 |
| H37Rv_KO_SugABC | -0.929 | -0.135 |
| H37Rv_KO_MbtN | 0.264 | 0.468 |
| Trans05 | -1.679 | -0.072 |
| macrophage_unactivated | -0.259 | -0.729 |
| IL1 | -3.168 | -1.103 |
| Rapamycin | -0.948 | -1.264 |
| Tcell | -0.404 | -0.026 |
| GMCSF | -1.853 | -0.855 |
| IFNab | -1.808 | -1.403 |
| IFNg | -2.638 | -1.213 |
| IFNg_GMCSF1 | -1.345 | -0.698 |
| Rv1432_day32 | -1.675 | -0.339 |
| Rv1565c_day32 | -1.139 | -0.488 |
| secA2_input | -0.504 | -0.067 |
| delta_Rv3594 | -0.066 | 0.219 |
| delta_Rv3717 | -1.057 | -0.447 |
| delta_Rv3811 | -1.034 | 0.089 |
| delta_Rv0954 | -1.495 | -0.167 |
| PonA1 | -2.308 | 0.194 |
| EccD1_KO | -0.927 | 0.49 |
| EspI_KO | -0.091 | 0.351 |
| PE35_KO | 0.359 | 0.397 |
| PPE68_KO | -0.544 | 0.873 |
| glycerol2 | -0.433 | 0.573 |
| lignocerate | 0.145 | 0.32 |
| oleate | -0.265 | 0.763 |
| phosphatidylcholine | 0.277 | 0.882 |
| acetate | -0.382 | -0.253 |
| glucAc | 0.088 | -0.363 |
| Rv0950ko | 0.084 | 0.606 |
| Rv1096ko | -0.262 | -0.817 |
| Rv3684ko | -0.481 | -0.321 |
| delta_otsA_trehalose | -2.072 | -1.123 |