Top 10 genes with highest correlation to Rv2808/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3697c/vapC48 | (cc=0.5575) | info on Rv3697c/vapC48 |
| Rv2647/- | (cc=0.5553) | info on Rv2647/- |
| Rv1205/- | (cc=0.5379) | info on Rv1205/- |
| Rv3018c/PPE46 | (cc=0.5325) | info on Rv3018c/PPE46 |
| Rv1260/- | (cc=0.5176) | info on Rv1260/- |
| Rv1646/PE17 | (cc=0.5092) | info on Rv1646/PE17 |
| Rv1206/fadD6 | (cc=0.4987) | info on Rv1206/fadD6 |
| Rv0755c/PPE12 | (cc=0.4821) | info on Rv0755c/PPE12 |
| Rv0554/bpoC | (cc=0.469) | info on Rv0554/bpoC |
| Rv2941/fadD28 | (cc=0.4645) | info on Rv2941/fadD28 |
Correlation of Rv2808/- with Rv0755c/PPE12
Normalized LFCs for Rv2808/-:
(description and provenance of datasets)
| Rv2808/- | Rv0755c/PPE12 | |
| Fe_supp_jason_reseq | 0.766 | -0.553 |
| low_pH_jason_reseq | -0.124 | -0.634 |
| NO_jason_reseq | 0.69 | -0.179 |
| B6_jason_reseq | 2.801 | -0.128 |
| MHCII_jason_reseq | 1.22 | 1.052 |
| Isoniazid02 | 0.0 | -0.316 |
| Rifampicin4 | 0.791 | -0.092 |
| Ethambutol3 | 0.427 | 0.585 |
| Meropenem3 | 0.444 | -0.307 |
| Vancomycin16 | 0.775 | 0.34 |
| Rv2680_day32 | -3.002 | -0.516 |
| H37Rv_KO_MarP | -0.114 | 0.628 |
| hypoxia_3wks | -0.825 | -0.104 |
| hypoxia_6wks | 0.023 | -0.34 |
| glycerol | -0.066 | 0.353 |
| cholesterol | 0.379 | -0.482 |
| AJ | 1.128 | 0.785 |
| Bibs02 | 0.642 | 0.832 |
| Bibs02c | -0.103 | 1.028 |
| BL6 | -0.255 | -0.518 |
| BL6a | -0.502 | 0.528 |
| BXD01 | 0.222 | 0.207 |
| BXD010 | 0.472 | 0.879 |
| BXD011 | 0.719 | 1.712 |
| BXD03 | 0.266 | 0.075 |
| BXD04 | -0.061 | -0.176 |
| BXD05 | -0.851 | 0.491 |
| BXD06 | 0.246 | 0.025 |
| BXD07 | 0.138 | 0.052 |
| BXD08 | 0.66 | -0.189 |
| BXD09 | -0.314 | -0.14 |
| CAST | 1.565 | 0.402 |
| CCcont | 0.244 | 0.083 |
| DS01 | 0.589 | 0.799 |
| DS02 | 1.175 | 1.068 |
| DS04 | 0.822 | 0.682 |
| DS0c | 0.848 | 0.933 |
| GP01 | -0.654 | -0.66 |
| GP02 | -0.764 | -0.299 |
| GP0c | -0.577 | -0.654 |
| NOD | 2.481 | 0.76 |
| NZO | 1.097 | 0.858 |
| PWK | 0.334 | 0.689 |
| H37Rv_KO_CtpC | 0.976 | 1.014 |
| H37Rv_KO_CtpD | -1.163 | 1.246 |
| H37Rv_KO_Rv1272 | 0.045 | 0.417 |
| H37Rv_KO_SugABC | -0.929 | -0.078 |
| H37Rv_KO_MbtN | 0.264 | -0.081 |
| Trans05 | -1.679 | 0.29 |
| macrophage_unactivated | -0.259 | -0.915 |
| IL1 | -3.168 | -0.24 |
| Rapamycin | -0.948 | -1.194 |
| Tcell | -0.404 | -0.355 |
| GMCSF | -1.853 | -0.681 |
| IFNab | -1.808 | -1.611 |
| IFNg | -2.638 | -0.861 |
| IFNg_GMCSF1 | -1.345 | -0.811 |
| Rv1432_day32 | -1.675 | -0.206 |
| Rv1565c_day32 | -1.139 | -0.486 |
| secA2_input | -0.504 | -0.65 |
| delta_Rv3594 | -0.066 | 0.038 |
| delta_Rv3717 | -1.057 | -0.886 |
| delta_Rv3811 | -1.034 | -0.507 |
| delta_Rv0954 | -1.495 | 0.096 |
| PonA1 | -2.308 | -0.719 |
| EccD1_KO | -0.927 | 0.444 |
| EspI_KO | -0.091 | 0.935 |
| PE35_KO | 0.359 | 0.318 |
| PPE68_KO | -0.544 | 0.432 |
| glycerol2 | -0.433 | 0.347 |
| lignocerate | 0.145 | 0.347 |
| oleate | -0.265 | -0.065 |
| phosphatidylcholine | 0.277 | 0.643 |
| acetate | -0.382 | 0.181 |
| glucAc | 0.088 | -0.024 |
| Rv0950ko | 0.084 | 0.223 |
| Rv1096ko | -0.262 | -0.483 |
| Rv3684ko | -0.481 | -0.085 |
| delta_otsA_trehalose | -2.072 | 0.345 |