Top 10 genes with highest correlation to Rv2808/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3697c/vapC48 | (cc=0.5575) | info on Rv3697c/vapC48 |
| Rv2647/- | (cc=0.5553) | info on Rv2647/- |
| Rv1205/- | (cc=0.5379) | info on Rv1205/- |
| Rv3018c/PPE46 | (cc=0.5325) | info on Rv3018c/PPE46 |
| Rv1260/- | (cc=0.5176) | info on Rv1260/- |
| Rv1646/PE17 | (cc=0.5092) | info on Rv1646/PE17 |
| Rv1206/fadD6 | (cc=0.4987) | info on Rv1206/fadD6 |
| Rv0755c/PPE12 | (cc=0.4821) | info on Rv0755c/PPE12 |
| Rv0554/bpoC | (cc=0.469) | info on Rv0554/bpoC |
| Rv2941/fadD28 | (cc=0.4645) | info on Rv2941/fadD28 |
Correlation of Rv2808/- with Rv0554/bpoC
Normalized LFCs for Rv2808/-:
(description and provenance of datasets)
| Rv2808/- | Rv0554/bpoC | |
| Fe_supp_jason_reseq | 0.766 | -0.069 |
| low_pH_jason_reseq | -0.124 | 2.332 |
| NO_jason_reseq | 0.69 | 1.457 |
| B6_jason_reseq | 2.801 | 1.771 |
| MHCII_jason_reseq | 1.22 | -2.262 |
| Isoniazid02 | 0.0 | 0.055 |
| Rifampicin4 | 0.791 | -0.382 |
| Ethambutol3 | 0.427 | -0.212 |
| Meropenem3 | 0.444 | 0.506 |
| Vancomycin16 | 0.775 | 0.844 |
| Rv2680_day32 | -3.002 | -1.682 |
| H37Rv_KO_MarP | -0.114 | 1.099 |
| hypoxia_3wks | -0.825 | -4.506 |
| hypoxia_6wks | 0.023 | -4.803 |
| glycerol | -0.066 | 1.349 |
| cholesterol | 0.379 | 1.172 |
| AJ | 1.128 | 1.54 |
| Bibs02 | 0.642 | -2.311 |
| Bibs02c | -0.103 | -2.501 |
| BL6 | -0.255 | -0.478 |
| BL6a | -0.502 | -0.375 |
| BXD01 | 0.222 | 0.563 |
| BXD010 | 0.472 | -0.21 |
| BXD011 | 0.719 | -0.697 |
| BXD03 | 0.266 | -0.924 |
| BXD04 | -0.061 | -0.73 |
| BXD05 | -0.851 | -0.338 |
| BXD06 | 0.246 | 0.382 |
| BXD07 | 0.138 | -0.581 |
| BXD08 | 0.66 | -0.258 |
| BXD09 | -0.314 | -0.369 |
| CAST | 1.565 | 1.758 |
| CCcont | 0.244 | -0.784 |
| DS01 | 0.589 | 0.756 |
| DS02 | 1.175 | 1.07 |
| DS04 | 0.822 | 0.446 |
| DS0c | 0.848 | 0.355 |
| GP01 | -0.654 | -2.41 |
| GP02 | -0.764 | -2.107 |
| GP0c | -0.577 | -3.812 |
| NOD | 2.481 | 1.622 |
| NZO | 1.097 | 1.36 |
| PWK | 0.334 | 0.234 |
| H37Rv_KO_CtpC | 0.976 | 1.234 |
| H37Rv_KO_CtpD | -1.163 | 0.128 |
| H37Rv_KO_Rv1272 | 0.045 | -0.317 |
| H37Rv_KO_SugABC | -0.929 | -0.823 |
| H37Rv_KO_MbtN | 0.264 | -1.683 |
| Trans05 | -1.679 | -0.771 |
| macrophage_unactivated | -0.259 | 1.026 |
| IL1 | -3.168 | -1.661 |
| Rapamycin | -0.948 | -2.194 |
| Tcell | -0.404 | 3.891 |
| GMCSF | -1.853 | -4.906 |
| IFNab | -1.808 | -6.0 |
| IFNg | -2.638 | -4.105 |
| IFNg_GMCSF1 | -1.345 | -1.049 |
| Rv1432_day32 | -1.675 | -1.813 |
| Rv1565c_day32 | -1.139 | 0.248 |
| secA2_input | -0.504 | -0.158 |
| delta_Rv3594 | -0.066 | -4.812 |
| delta_Rv3717 | -1.057 | -4.394 |
| delta_Rv3811 | -1.034 | -4.921 |
| delta_Rv0954 | -1.495 | -2.084 |
| PonA1 | -2.308 | -0.771 |
| EccD1_KO | -0.927 | 0.697 |
| EspI_KO | -0.091 | 1.107 |
| PE35_KO | 0.359 | 0.753 |
| PPE68_KO | -0.544 | 0.461 |
| glycerol2 | -0.433 | -0.356 |
| lignocerate | 0.145 | 0.041 |
| oleate | -0.265 | 0.22 |
| phosphatidylcholine | 0.277 | 0.207 |
| acetate | -0.382 | 0.432 |
| glucAc | 0.088 | 0.168 |
| Rv0950ko | 0.084 | 1.556 |
| Rv1096ko | -0.262 | 0.847 |
| Rv3684ko | -0.481 | 2.515 |
| delta_otsA_trehalose | -2.072 | 0.165 |