Top 10 genes with highest correlation to Rv2784c/lppU:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0910/- | (cc=0.6227) | info on Rv0910/- |
| Rv1539/lspA | (cc=0.614) | info on Rv1539/lspA |
| Rv2681/- | (cc=0.6116) | info on Rv2681/- |
| Rv1140/- | (cc=0.5818) | info on Rv1140/- |
| Rv2564/glnQ | (cc=0.5691) | info on Rv2564/glnQ |
| Rv3482c/- | (cc=0.5611) | info on Rv3482c/- |
| Rv2563/- | (cc=0.5599) | info on Rv2563/- |
| Rv3651/- | (cc=0.5543) | info on Rv3651/- |
| Rv1323/fadA4 | (cc=0.552) | info on Rv1323/fadA4 |
| Rv0561c/- | (cc=0.5508) | info on Rv0561c/- |
Correlation of Rv2784c/lppU with Rv1539/lspA
Normalized LFCs for Rv2784c/lppU:
(description and provenance of datasets)
| Rv2784c/lppU | Rv1539/lspA | |
| Fe_supp_jason_reseq | 1.512 | 1.994 |
| low_pH_jason_reseq | -0.428 | 0.0 |
| NO_jason_reseq | -0.709 | 0.0 |
| B6_jason_reseq | -0.669 | 0.153 |
| MHCII_jason_reseq | 0.497 | 1.175 |
| Isoniazid02 | 0.84 | -0.682 |
| Rifampicin4 | -1.356 | -1.584 |
| Ethambutol3 | 1.155 | 0.095 |
| Meropenem3 | 0.582 | -0.562 |
| Vancomycin16 | 0.186 | -1.552 |
| Rv2680_day32 | -0.617 | -1.078 |
| H37Rv_KO_MarP | 2.004 | 0.566 |
| hypoxia_3wks | 0.375 | -0.502 |
| hypoxia_6wks | -1.105 | -0.263 |
| glycerol | 0.259 | -0.399 |
| cholesterol | 0.256 | -1.215 |
| AJ | -0.008 | -0.671 |
| Bibs02 | 0.286 | 1.915 |
| Bibs02c | 0.218 | -0.239 |
| BL6 | -1.188 | -1.392 |
| BL6a | -0.192 | -2.204 |
| BXD01 | -0.88 | -1.449 |
| BXD010 | -1.691 | -1.425 |
| BXD011 | -1.875 | -1.069 |
| BXD03 | -1.786 | -1.505 |
| BXD04 | -0.9 | -1.376 |
| BXD05 | -2.264 | -1.497 |
| BXD06 | -2.059 | -1.485 |
| BXD07 | -1.326 | -1.541 |
| BXD08 | -1.004 | -1.48 |
| BXD09 | -1.159 | -1.564 |
| CAST | -1.308 | -1.431 |
| CCcont | -0.195 | -0.231 |
| DS01 | 0.814 | 0.601 |
| DS02 | 0.438 | 0.293 |
| DS04 | 1.552 | 1.727 |
| DS0c | 0.695 | 0.729 |
| GP01 | -0.996 | -1.001 |
| GP02 | 0.519 | -0.698 |
| GP0c | -1.203 | -0.439 |
| NOD | 0.073 | -1.71 |
| NZO | -0.053 | -1.839 |
| PWK | -0.783 | -1.351 |
| H37Rv_KO_CtpC | -0.579 | -1.498 |
| H37Rv_KO_CtpD | -0.896 | -0.366 |
| H37Rv_KO_Rv1272 | -0.4 | -0.972 |
| H37Rv_KO_SugABC | -0.191 | -0.334 |
| H37Rv_KO_MbtN | -0.828 | -0.71 |
| Trans05 | -2.359 | -1.454 |
| macrophage_unactivated | 0.612 | 0.0 |
| IL1 | -0.234 | -0.409 |
| Rapamycin | 0.654 | 0.0 |
| Tcell | -0.218 | 0.0 |
| GMCSF | -0.428 | -0.364 |
| IFNab | -0.998 | -0.417 |
| IFNg | -0.211 | 0.0 |
| IFNg_GMCSF1 | -1.395 | 0.0 |
| Rv1432_day32 | -1.241 | 0.0 |
| Rv1565c_day32 | 0.25 | 0.0 |
| secA2_input | 1.176 | 0.495 |
| delta_Rv3594 | 0.411 | 0.113 |
| delta_Rv3717 | -1.026 | -0.992 |
| delta_Rv3811 | 0.589 | -0.656 |
| delta_Rv0954 | 0.504 | 1.478 |
| PonA1 | 2.124 | 1.769 |
| EccD1_KO | 0.187 | -1.059 |
| EspI_KO | 0.502 | -1.403 |
| PE35_KO | 1.003 | 1.21 |
| PPE68_KO | 0.291 | -0.211 |
| glycerol2 | 0.217 | 0.0 |
| lignocerate | 0.564 | 0.0 |
| oleate | 0.489 | 0.0 |
| phosphatidylcholine | 1.31 | 0.0 |
| acetate | -0.643 | 0.0 |
| glucAc | -0.852 | 0.0 |
| Rv0950ko | -0.947 | 0.651 |
| Rv1096ko | -0.694 | -1.113 |
| Rv3684ko | -1.32 | -0.832 |
| delta_otsA_trehalose | -0.019 | 0.818 |