TnSeqCorr

Top 10 genes with highest correlation to Rv2715/-:

update plotcorrelationlink to info on gene
Rv2394/ggtB (cc=0.6425) info on Rv2394/ggtB
Rv0338c/- (cc=0.5414) info on Rv0338c/-
Rv2268c/cyp128 (cc=0.4909) info on Rv2268c/cyp128
Rv2189c/- (cc=0.4775) info on Rv2189c/-
Rv0373c/- (cc=0.4709) info on Rv0373c/-
Rv1317c/alkA (cc=0.4611) info on Rv1317c/alkA
Rv3730c/- (cc=0.4507) info on Rv3730c/-
Rv0069c/sdaA (cc=0.4477) info on Rv0069c/sdaA
Rv2962c/- (cc=0.437) info on Rv2962c/-
Rv0797/- (cc=0.4327) info on Rv0797/-

Correlation of Rv2715/- with Rv1317c/alkA

Normalized LFCs for Rv2715/-:
(description and provenance of datasets)
Rv2715/-Rv1317c/alkA
Fe_supp_jason_reseq

-0.508

-0.628

low_pH_jason_reseq

0.796

-1.337

NO_jason_reseq

-0.646

-0.711

B6_jason_reseq

-0.542

-0.498

MHCII_jason_reseq

0.346

-0.365

Isoniazid02

1.224

1.264

Rifampicin4

-0.504

0.062

Ethambutol3

2.932

1.267

Meropenem3

2.498

0.236

Vancomycin16

0.0

0.297

Rv2680_day32

-0.73

0.21

H37Rv_KO_MarP

0.223

0.353

hypoxia_3wks

-0.116

0.132

hypoxia_6wks

0.175

0.086

glycerol

-0.471

-0.377

cholesterol

4.799

1.811

AJ

-0.024

-0.281

Bibs02

-0.223

-0.342

Bibs02c

1.516

0.867

BL6

0.26

-0.792

BL6a

1.24

0.423

BXD01

0.314

-0.77

BXD010

1.166

-0.141

BXD011

0.642

-0.328

BXD03

0.349

-0.599

BXD04

0.809

-0.156

BXD05

0.369

-0.677

BXD06

0.366

0.156

BXD07

0.357

-0.259

BXD08

0.448

0.103

BXD09

0.788

-0.458

CAST

-0.28

-0.47

CCcont

0.348

-0.973

DS01

0.429

-0.4

DS02

0.132

-0.917

DS04

0.682

0.252

DS0c

0.046

-0.127

GP01

0.804

-1.167

GP02

0.516

0.142

GP0c

0.387

-0.98

NOD

1.787

-0.155

NZO

-0.964

-0.241

PWK

0.158

0.45

H37Rv_KO_CtpC

0.607

-0.639

H37Rv_KO_CtpD

0.185

-0.759

H37Rv_KO_Rv1272

0.558

-1.334

H37Rv_KO_SugABC

0.898

-0.141

H37Rv_KO_MbtN

1.101

-0.518

Trans05

1.278

0.096

macrophage_unactivated

0.3

-0.71

IL1

-0.065

-0.332

Rapamycin

0.353

0.129

Tcell

0.176

-0.313

GMCSF

-0.148

0.222

IFNab

-0.133

-0.178

IFNg

0.644

0.486

IFNg_GMCSF1

-0.358

-0.424

Rv1432_day32

-0.499

0.368

Rv1565c_day32

-0.655

-0.393

secA2_input

-0.11

0.387

delta_Rv3594

0.728

-0.489

delta_Rv3717

0.151

-0.148

delta_Rv3811

1.169

0.064

delta_Rv0954

0.783

-0.012

PonA1

0.386

-0.965

EccD1_KO

1.095

-0.105

EspI_KO

0.95

-0.448

PE35_KO

1.476

0.0

PPE68_KO

0.784

-0.179

glycerol2

-0.476

-0.454

lignocerate

0.102

-0.369

oleate

-0.216

-0.096

phosphatidylcholine

0.0

-0.368

acetate

0.206

-1.122

glucAc

0.481

-0.605

Rv0950ko

-0.109

-0.618

Rv1096ko

-0.145

-0.118

Rv3684ko

-0.318

-0.154

delta_otsA_trehalose

0.879

-0.113