Top 10 genes with highest correlation to Rv2596/vapC40:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2490c/PE_PGRS43 | (cc=0.4561) | info on Rv2490c/PE_PGRS43 |
| Rv2474c/- | (cc=0.4384) | info on Rv2474c/- |
| Rv0278c/PE_PGRS3 | (cc=0.4204) | info on Rv0278c/PE_PGRS3 |
| Rv0649/fabD2 | (cc=0.4066) | info on Rv0649/fabD2 |
| Rv2076c/- | (cc=0.404) | info on Rv2076c/- |
| Rv2464c/- | (cc=0.3995) | info on Rv2464c/- |
| Rv2603c/- | (cc=0.3969) | info on Rv2603c/- |
| Rv3335c/- | (cc=0.3966) | info on Rv3335c/- |
| Rv2590/fadD9 | (cc=0.3951) | info on Rv2590/fadD9 |
| Rv0103c/ctpB | (cc=0.3839) | info on Rv0103c/ctpB |
Correlation of Rv2596/vapC40 with Rv3335c/-
Normalized LFCs for Rv2596/vapC40:
(description and provenance of datasets)
| Rv2596/vapC40 | Rv3335c/- | |
| Fe_supp_jason_reseq | -0.341 | -1.986 |
| low_pH_jason_reseq | -1.031 | -0.249 |
| NO_jason_reseq | -0.383 | -0.462 |
| B6_jason_reseq | 0.031 | 1.534 |
| MHCII_jason_reseq | 0.499 | -0.724 |
| Isoniazid02 | 0.792 | 0.313 |
| Rifampicin4 | 0.317 | 0.0 |
| Ethambutol3 | 0.061 | 0.04 |
| Meropenem3 | 0.155 | 0.152 |
| Vancomycin16 | 0.493 | 0.493 |
| Rv2680_day32 | 0.33 | -0.067 |
| H37Rv_KO_MarP | -0.008 | -0.375 |
| hypoxia_3wks | -0.08 | -1.623 |
| hypoxia_6wks | 0.248 | -1.142 |
| glycerol | 0.693 | 0.774 |
| cholesterol | -0.044 | 0.221 |
| AJ | -0.284 | 0.413 |
| Bibs02 | -0.123 | 0.829 |
| Bibs02c | -0.371 | -0.411 |
| BL6 | 0.167 | 0.726 |
| BL6a | -0.121 | -0.218 |
| BXD01 | -0.063 | 0.164 |
| BXD010 | -0.071 | -0.783 |
| BXD011 | 0.565 | -0.25 |
| BXD03 | -0.179 | -2.177 |
| BXD04 | -0.352 | -1.184 |
| BXD05 | -0.008 | -0.289 |
| BXD06 | -0.044 | -0.125 |
| BXD07 | 0.129 | -0.458 |
| BXD08 | 0.239 | -0.413 |
| BXD09 | 0.061 | -0.859 |
| CAST | -0.509 | -0.37 |
| CCcont | 0.078 | 0.41 |
| DS01 | -0.159 | -0.984 |
| DS02 | -0.058 | -0.72 |
| DS04 | 0.122 | -1.858 |
| DS0c | -0.231 | -2.624 |
| GP01 | -0.162 | 0.085 |
| GP02 | 0.523 | -1.089 |
| GP0c | -0.155 | -0.255 |
| NOD | -0.306 | 0.742 |
| NZO | -0.292 | 0.764 |
| PWK | 0.108 | 0.963 |
| H37Rv_KO_CtpC | -1.074 | -0.538 |
| H37Rv_KO_CtpD | 0.617 | 2.842 |
| H37Rv_KO_Rv1272 | -0.25 | 0.434 |
| H37Rv_KO_SugABC | 0.163 | -0.481 |
| H37Rv_KO_MbtN | 0.463 | 1.923 |
| Trans05 | -0.08 | -0.06 |
| macrophage_unactivated | -0.221 | -1.37 |
| IL1 | -0.133 | -1.777 |
| Rapamycin | -0.074 | -2.262 |
| Tcell | -0.482 | -0.821 |
| GMCSF | 0.597 | 2.445 |
| IFNab | -0.314 | -0.762 |
| IFNg | -0.053 | -0.406 |
| IFNg_GMCSF1 | -0.723 | -1.364 |
| Rv1432_day32 | 0.434 | -0.213 |
| Rv1565c_day32 | 0.115 | -2.671 |
| secA2_input | 1.384 | 0.371 |
| delta_Rv3594 | 0.268 | 0.33 |
| delta_Rv3717 | 0.386 | 0.832 |
| delta_Rv3811 | -0.544 | 1.487 |
| delta_Rv0954 | -0.204 | 0.199 |
| PonA1 | 0.694 | 1.482 |
| EccD1_KO | -0.174 | -0.776 |
| EspI_KO | 0.85 | -0.174 |
| PE35_KO | 0.28 | 1.24 |
| PPE68_KO | 0.163 | 0.422 |
| glycerol2 | 0.321 | 3.013 |
| lignocerate | 0.621 | 2.934 |
| oleate | 0.337 | -0.961 |
| phosphatidylcholine | 0.613 | 2.178 |
| acetate | 0.61 | 3.769 |
| glucAc | 0.507 | 3.181 |
| Rv0950ko | 0.89 | -0.274 |
| Rv1096ko | -0.398 | 0.733 |
| Rv3684ko | 0.599 | -0.455 |
| delta_otsA_trehalose | -0.69 | -1.175 |