Top 10 genes with highest correlation to Rv2596/vapC40:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2490c/PE_PGRS43 | (cc=0.4561) | info on Rv2490c/PE_PGRS43 |
| Rv2474c/- | (cc=0.4384) | info on Rv2474c/- |
| Rv0278c/PE_PGRS3 | (cc=0.4204) | info on Rv0278c/PE_PGRS3 |
| Rv0649/fabD2 | (cc=0.4066) | info on Rv0649/fabD2 |
| Rv2076c/- | (cc=0.404) | info on Rv2076c/- |
| Rv2464c/- | (cc=0.3995) | info on Rv2464c/- |
| Rv2603c/- | (cc=0.3969) | info on Rv2603c/- |
| Rv3335c/- | (cc=0.3966) | info on Rv3335c/- |
| Rv2590/fadD9 | (cc=0.3951) | info on Rv2590/fadD9 |
| Rv0103c/ctpB | (cc=0.3839) | info on Rv0103c/ctpB |
Correlation of Rv2596/vapC40 with Rv0278c/PE_PGRS3
Normalized LFCs for Rv2596/vapC40:
(description and provenance of datasets)
| Rv2596/vapC40 | Rv0278c/PE_PGRS3 | |
| Fe_supp_jason_reseq | -0.341 | -0.425 |
| low_pH_jason_reseq | -1.031 | -0.853 |
| NO_jason_reseq | -0.383 | -0.249 |
| B6_jason_reseq | 0.031 | -0.18 |
| MHCII_jason_reseq | 0.499 | 0.931 |
| Isoniazid02 | 0.792 | -0.119 |
| Rifampicin4 | 0.317 | 0.412 |
| Ethambutol3 | 0.061 | 0.711 |
| Meropenem3 | 0.155 | 1.444 |
| Vancomycin16 | 0.493 | 0.0 |
| Rv2680_day32 | 0.33 | 0.83 |
| H37Rv_KO_MarP | -0.008 | 0.416 |
| hypoxia_3wks | -0.08 | -0.427 |
| hypoxia_6wks | 0.248 | -0.223 |
| glycerol | 0.693 | 1.118 |
| cholesterol | -0.044 | 1.118 |
| AJ | -0.284 | 0.341 |
| Bibs02 | -0.123 | 1.095 |
| Bibs02c | -0.371 | 0.041 |
| BL6 | 0.167 | -0.701 |
| BL6a | -0.121 | -1.045 |
| BXD01 | -0.063 | -0.192 |
| BXD010 | -0.071 | -0.594 |
| BXD011 | 0.565 | -0.553 |
| BXD03 | -0.179 | -0.902 |
| BXD04 | -0.352 | -1.024 |
| BXD05 | -0.008 | -0.544 |
| BXD06 | -0.044 | -1.105 |
| BXD07 | 0.129 | -0.269 |
| BXD08 | 0.239 | -0.197 |
| BXD09 | 0.061 | -0.342 |
| CAST | -0.509 | -0.045 |
| CCcont | 0.078 | -0.122 |
| DS01 | -0.159 | -0.144 |
| DS02 | -0.058 | 0.759 |
| DS04 | 0.122 | 0.382 |
| DS0c | -0.231 | -0.178 |
| GP01 | -0.162 | 0.852 |
| GP02 | 0.523 | 0.732 |
| GP0c | -0.155 | 0.169 |
| NOD | -0.306 | -0.602 |
| NZO | -0.292 | -0.039 |
| PWK | 0.108 | 0.185 |
| H37Rv_KO_CtpC | -1.074 | -0.705 |
| H37Rv_KO_CtpD | 0.617 | -0.077 |
| H37Rv_KO_Rv1272 | -0.25 | 0.081 |
| H37Rv_KO_SugABC | 0.163 | 0.146 |
| H37Rv_KO_MbtN | 0.463 | -0.578 |
| Trans05 | -0.08 | 0.723 |
| macrophage_unactivated | -0.221 | -0.211 |
| IL1 | -0.133 | -1.783 |
| Rapamycin | -0.074 | -1.013 |
| Tcell | -0.482 | -1.075 |
| GMCSF | 0.597 | -0.982 |
| IFNab | -0.314 | -0.998 |
| IFNg | -0.053 | -0.882 |
| IFNg_GMCSF1 | -0.723 | -0.211 |
| Rv1432_day32 | 0.434 | 0.24 |
| Rv1565c_day32 | 0.115 | -0.622 |
| secA2_input | 1.384 | -0.028 |
| delta_Rv3594 | 0.268 | 0.02 |
| delta_Rv3717 | 0.386 | 0.156 |
| delta_Rv3811 | -0.544 | -0.498 |
| delta_Rv0954 | -0.204 | -0.634 |
| PonA1 | 0.694 | 0.479 |
| EccD1_KO | -0.174 | 0.095 |
| EspI_KO | 0.85 | 0.442 |
| PE35_KO | 0.28 | 0.213 |
| PPE68_KO | 0.163 | 0.234 |
| glycerol2 | 0.321 | 2.123 |
| lignocerate | 0.621 | 2.776 |
| oleate | 0.337 | 0.0 |
| phosphatidylcholine | 0.613 | 2.122 |
| acetate | 0.61 | 3.238 |
| glucAc | 0.507 | 2.725 |
| Rv0950ko | 0.89 | 0.0 |
| Rv1096ko | -0.398 | 0.247 |
| Rv3684ko | 0.599 | -0.111 |
| delta_otsA_trehalose | -0.69 | -1.199 |