TnSeqCorr

Top 10 genes with highest correlation to Rv2596/vapC40:

update plotcorrelationlink to info on gene
Rv2490c/PE_PGRS43 (cc=0.4561) info on Rv2490c/PE_PGRS43
Rv2474c/- (cc=0.4384) info on Rv2474c/-
Rv0278c/PE_PGRS3 (cc=0.4204) info on Rv0278c/PE_PGRS3
Rv0649/fabD2 (cc=0.4066) info on Rv0649/fabD2
Rv2076c/- (cc=0.404) info on Rv2076c/-
Rv2464c/- (cc=0.3995) info on Rv2464c/-
Rv2603c/- (cc=0.3969) info on Rv2603c/-
Rv3335c/- (cc=0.3966) info on Rv3335c/-
Rv2590/fadD9 (cc=0.3951) info on Rv2590/fadD9
Rv0103c/ctpB (cc=0.3839) info on Rv0103c/ctpB

Correlation of Rv2596/vapC40 with Rv0103c/ctpB

Normalized LFCs for Rv2596/vapC40:
(description and provenance of datasets)
Rv2596/vapC40Rv0103c/ctpB
Fe_supp_jason_reseq

-0.341

0.06

low_pH_jason_reseq

-1.031

-0.805

NO_jason_reseq

-0.383

-0.52

B6_jason_reseq

0.031

0.484

MHCII_jason_reseq

0.499

0.859

Isoniazid02

0.792

-0.071

Rifampicin4

0.317

0.295

Ethambutol3

0.061

-0.05

Meropenem3

0.155

0.184

Vancomycin16

0.493

0.615

Rv2680_day32

0.33

-0.142

H37Rv_KO_MarP

-0.008

0.581

hypoxia_3wks

-0.08

-0.088

hypoxia_6wks

0.248

0.219

glycerol

0.693

-0.638

cholesterol

-0.044

-0.313

AJ

-0.284

-0.126

Bibs02

-0.123

-0.115

Bibs02c

-0.371

-0.494

BL6

0.167

-0.422

BL6a

-0.121

-0.844

BXD01

-0.063

-0.211

BXD010

-0.071

-0.739

BXD011

0.565

-0.183

BXD03

-0.179

-1.053

BXD04

-0.352

-0.581

BXD05

-0.008

-0.667

BXD06

-0.044

-0.512

BXD07

0.129

-0.633

BXD08

0.239

0.027

BXD09

0.061

-0.624

CAST

-0.509

0.153

CCcont

0.078

-0.447

DS01

-0.159

0.373

DS02

-0.058

0.441

DS04

0.122

0.469

DS0c

-0.231

0.086

GP01

-0.162

-0.642

GP02

0.523

-0.143

GP0c

-0.155

-0.855

NOD

-0.306

-0.083

NZO

-0.292

-0.315

PWK

0.108

-0.024

H37Rv_KO_CtpC

-1.074

-0.681

H37Rv_KO_CtpD

0.617

0.382

H37Rv_KO_Rv1272

-0.25

-1.039

H37Rv_KO_SugABC

0.163

0.0

H37Rv_KO_MbtN

0.463

-0.228

Trans05

-0.08

-0.349

macrophage_unactivated

-0.221

-0.458

IL1

-0.133

-0.341

Rapamycin

-0.074

-0.915

Tcell

-0.482

-0.808

GMCSF

0.597

-0.055

IFNab

-0.314

-0.169

IFNg

-0.053

0.072

IFNg_GMCSF1

-0.723

-0.245

Rv1432_day32

0.434

2.207

Rv1565c_day32

0.115

-0.153

secA2_input

1.384

1.234

delta_Rv3594

0.268

-0.292

delta_Rv3717

0.386

-0.316

delta_Rv3811

-0.544

-0.171

delta_Rv0954

-0.204

0.159

PonA1

0.694

-0.03

EccD1_KO

-0.174

-0.181

EspI_KO

0.85

-0.65

PE35_KO

0.28

-0.831

PPE68_KO

0.163

-0.832

glycerol2

0.321

0.315

lignocerate

0.621

0.409

oleate

0.337

0.23

phosphatidylcholine

0.613

0.389

acetate

0.61

0.64

glucAc

0.507

0.412

Rv0950ko

0.89

0.829

Rv1096ko

-0.398

0.38

Rv3684ko

0.599

0.472

delta_otsA_trehalose

-0.69

1.121