Top 10 genes with highest correlation to Rv2499c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0089/- | (cc=0.7449) | info on Rv0089/- |
| Rv3354/- | (cc=0.7441) | info on Rv3354/- |
| Rv1974/- | (cc=0.7416) | info on Rv1974/- |
| Rv2633c/- | (cc=0.7387) | info on Rv2633c/- |
| Rv0228/- | (cc=0.7251) | info on Rv0228/- |
| Rv3059/cyp136 | (cc=0.7019) | info on Rv3059/cyp136 |
| Rv0887c/- | (cc=0.7005) | info on Rv0887c/- |
| Rv1999c/- | (cc=0.6894) | info on Rv1999c/- |
| Rv3395c/- | (cc=0.6815) | info on Rv3395c/- |
| Rv2474c/- | (cc=0.6756) | info on Rv2474c/- |
Correlation of Rv2499c/- with Rv3354/-
Normalized LFCs for Rv2499c/-:
(description and provenance of datasets)
| Rv2499c/- | Rv3354/- | |
| Fe_supp_jason_reseq | -0.616 | -1.138 |
| low_pH_jason_reseq | -1.8 | -0.381 |
| NO_jason_reseq | -0.924 | -0.793 |
| B6_jason_reseq | 1.142 | 0.985 |
| MHCII_jason_reseq | -1.609 | 1.019 |
| Isoniazid02 | -0.872 | 1.043 |
| Rifampicin4 | 0.533 | 0.125 |
| Ethambutol3 | -0.694 | 0.398 |
| Meropenem3 | 0.195 | 1.179 |
| Vancomycin16 | 0.247 | 0.162 |
| Rv2680_day32 | 0.0 | 0.659 |
| H37Rv_KO_MarP | 0.174 | 0.422 |
| hypoxia_3wks | -0.742 | -0.347 |
| hypoxia_6wks | -0.388 | -0.595 |
| glycerol | 0.967 | 0.674 |
| cholesterol | -0.119 | 0.892 |
| AJ | -0.343 | -0.171 |
| Bibs02 | 0.26 | -0.029 |
| Bibs02c | -1.214 | 0.596 |
| BL6 | -2.242 | -0.912 |
| BL6a | -2.115 | -0.067 |
| BXD01 | -2.665 | -1.687 |
| BXD010 | -2.664 | -1.434 |
| BXD011 | -2.425 | -2.812 |
| BXD03 | -2.86 | -2.487 |
| BXD04 | -1.887 | -1.729 |
| BXD05 | -3.683 | -1.146 |
| BXD06 | -2.522 | -1.932 |
| BXD07 | -3.265 | -2.262 |
| BXD08 | -2.572 | -1.667 |
| BXD09 | -3.757 | -2.542 |
| CAST | -0.622 | 0.097 |
| CCcont | -1.876 | -1.82 |
| DS01 | -1.617 | -0.077 |
| DS02 | -0.791 | 0.269 |
| DS04 | -1.667 | 0.395 |
| DS0c | -1.086 | -0.597 |
| GP01 | -2.003 | -1.486 |
| GP02 | -3.206 | -0.295 |
| GP0c | -2.75 | -0.754 |
| NOD | -0.552 | -0.169 |
| NZO | -0.509 | 0.127 |
| PWK | -0.401 | 0.367 |
| H37Rv_KO_CtpC | -3.906 | -0.788 |
| H37Rv_KO_CtpD | -3.139 | -1.146 |
| H37Rv_KO_Rv1272 | -1.794 | -0.927 |
| H37Rv_KO_SugABC | -2.382 | -0.855 |
| H37Rv_KO_MbtN | -3.225 | -1.624 |
| Trans05 | -4.218 | -0.244 |
| macrophage_unactivated | -2.538 | -1.654 |
| IL1 | -2.322 | -1.649 |
| Rapamycin | -4.431 | -1.034 |
| Tcell | -1.672 | -1.473 |
| GMCSF | -3.725 | -2.118 |
| IFNab | -3.292 | -2.056 |
| IFNg | -4.137 | -0.949 |
| IFNg_GMCSF1 | -1.141 | -0.641 |
| Rv1432_day32 | -1.549 | 0.3 |
| Rv1565c_day32 | -0.981 | 0.635 |
| secA2_input | -0.853 | 0.645 |
| delta_Rv3594 | 0.676 | -0.395 |
| delta_Rv3717 | 0.453 | -0.21 |
| delta_Rv3811 | 1.121 | 0.592 |
| delta_Rv0954 | -0.509 | 0.58 |
| PonA1 | 0.634 | -0.802 |
| EccD1_KO | 0.835 | 1.217 |
| EspI_KO | 1.021 | 1.201 |
| PE35_KO | 0.96 | 0.204 |
| PPE68_KO | 0.96 | 1.254 |
| glycerol2 | 1.667 | 1.595 |
| lignocerate | 2.366 | 1.672 |
| oleate | -2.006 | 0.822 |
| phosphatidylcholine | 1.902 | 1.291 |
| acetate | 2.258 | 1.047 |
| glucAc | 1.881 | 1.449 |
| Rv0950ko | 0.133 | 0.365 |
| Rv1096ko | -1.948 | 0.268 |
| Rv3684ko | -0.458 | 0.933 |
| delta_otsA_trehalose | 1.593 | 0.808 |