Top 10 genes with highest correlation to Rv2499c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0089/- | (cc=0.7449) | info on Rv0089/- |
| Rv3354/- | (cc=0.7441) | info on Rv3354/- |
| Rv1974/- | (cc=0.7416) | info on Rv1974/- |
| Rv2633c/- | (cc=0.7387) | info on Rv2633c/- |
| Rv0228/- | (cc=0.7251) | info on Rv0228/- |
| Rv3059/cyp136 | (cc=0.7019) | info on Rv3059/cyp136 |
| Rv0887c/- | (cc=0.7005) | info on Rv0887c/- |
| Rv1999c/- | (cc=0.6894) | info on Rv1999c/- |
| Rv3395c/- | (cc=0.6815) | info on Rv3395c/- |
| Rv2474c/- | (cc=0.6756) | info on Rv2474c/- |
Correlation of Rv2499c/- with Rv3059/cyp136
Normalized LFCs for Rv2499c/-:
(description and provenance of datasets)
| Rv2499c/- | Rv3059/cyp136 | |
| Fe_supp_jason_reseq | -0.616 | -0.786 |
| low_pH_jason_reseq | -1.8 | -1.248 |
| NO_jason_reseq | -0.924 | -0.438 |
| B6_jason_reseq | 1.142 | -0.289 |
| MHCII_jason_reseq | -1.609 | 0.252 |
| Isoniazid02 | -0.872 | -0.421 |
| Rifampicin4 | 0.533 | -0.766 |
| Ethambutol3 | -0.694 | 0.223 |
| Meropenem3 | 0.195 | -0.298 |
| Vancomycin16 | 0.247 | -0.371 |
| Rv2680_day32 | 0.0 | 0.114 |
| H37Rv_KO_MarP | 0.174 | 0.683 |
| hypoxia_3wks | -0.742 | -0.674 |
| hypoxia_6wks | -0.388 | -0.303 |
| glycerol | 0.967 | -0.919 |
| cholesterol | -0.119 | -1.049 |
| AJ | -0.343 | -0.215 |
| Bibs02 | 0.26 | -1.007 |
| Bibs02c | -1.214 | -0.929 |
| BL6 | -2.242 | -1.607 |
| BL6a | -2.115 | -1.482 |
| BXD01 | -2.665 | -1.374 |
| BXD010 | -2.664 | -1.409 |
| BXD011 | -2.425 | -1.538 |
| BXD03 | -2.86 | -1.053 |
| BXD04 | -1.887 | -0.991 |
| BXD05 | -3.683 | -1.387 |
| BXD06 | -2.522 | -1.515 |
| BXD07 | -3.265 | -1.927 |
| BXD08 | -2.572 | -1.873 |
| BXD09 | -3.757 | -1.449 |
| CAST | -0.622 | -0.038 |
| CCcont | -1.876 | -1.415 |
| DS01 | -1.617 | -0.986 |
| DS02 | -0.791 | -0.813 |
| DS04 | -1.667 | -1.054 |
| DS0c | -1.086 | -0.691 |
| GP01 | -2.003 | -0.195 |
| GP02 | -3.206 | -0.71 |
| GP0c | -2.75 | -1.204 |
| NOD | -0.552 | 0.708 |
| NZO | -0.509 | -0.056 |
| PWK | -0.401 | 0.107 |
| H37Rv_KO_CtpC | -3.906 | -0.899 |
| H37Rv_KO_CtpD | -3.139 | -1.081 |
| H37Rv_KO_Rv1272 | -1.794 | -1.077 |
| H37Rv_KO_SugABC | -2.382 | -0.55 |
| H37Rv_KO_MbtN | -3.225 | -1.428 |
| Trans05 | -4.218 | -0.998 |
| macrophage_unactivated | -2.538 | -0.789 |
| IL1 | -2.322 | -0.934 |
| Rapamycin | -4.431 | -1.381 |
| Tcell | -1.672 | -0.779 |
| GMCSF | -3.725 | -1.03 |
| IFNab | -3.292 | -1.379 |
| IFNg | -4.137 | -1.371 |
| IFNg_GMCSF1 | -1.141 | -0.767 |
| Rv1432_day32 | -1.549 | -0.991 |
| Rv1565c_day32 | -0.981 | 0.009 |
| secA2_input | -0.853 | -0.052 |
| delta_Rv3594 | 0.676 | 0.266 |
| delta_Rv3717 | 0.453 | -0.184 |
| delta_Rv3811 | 1.121 | 0.152 |
| delta_Rv0954 | -0.509 | 0.322 |
| PonA1 | 0.634 | 0.759 |
| EccD1_KO | 0.835 | -0.132 |
| EspI_KO | 1.021 | 0.14 |
| PE35_KO | 0.96 | 0.414 |
| PPE68_KO | 0.96 | 0.202 |
| glycerol2 | 1.667 | 2.535 |
| lignocerate | 2.366 | 1.141 |
| oleate | -2.006 | 0.213 |
| phosphatidylcholine | 1.902 | 2.475 |
| acetate | 2.258 | -0.497 |
| glucAc | 1.881 | -0.382 |
| Rv0950ko | 0.133 | -0.311 |
| Rv1096ko | -1.948 | -0.51 |
| Rv3684ko | -0.458 | -0.851 |
| delta_otsA_trehalose | 1.593 | 0.225 |