TnSeqCorr

Top 10 genes with highest correlation to Rv2486/echA14:

update plotcorrelationlink to info on gene
Rv2313c/- (cc=0.4892) info on Rv2313c/-
Rv2010/vapC15 (cc=0.4217) info on Rv2010/vapC15
Rv0230c/php (cc=0.4197) info on Rv0230c/php
Rv1410c/- (cc=0.4053) info on Rv1410c/-
Rv2658c/- (cc=0.4016) info on Rv2658c/-
Rv3843c/- (cc=0.395) info on Rv3843c/-
Rv1730c/- (cc=0.3948) info on Rv1730c/-
Rv0015c/pknA (cc=0.3946) info on Rv0015c/pknA
Rv0194/- (cc=0.3919) info on Rv0194/-
Rv0160c/PE4 (cc=0.3912) info on Rv0160c/PE4

Correlation of Rv2486/echA14 with Rv1730c/-

Normalized LFCs for Rv2486/echA14:
(description and provenance of datasets)
Rv2486/echA14Rv1730c/-
Fe_supp_jason_reseq

0.979

0.45

low_pH_jason_reseq

-0.525

1.029

NO_jason_reseq

-0.105

-0.373

B6_jason_reseq

1.292

1.364

MHCII_jason_reseq

0.524

0.91

Isoniazid02

-0.732

-0.3

Rifampicin4

-0.818

-0.412

Ethambutol3

-0.789

-0.06

Meropenem3

-0.648

-0.12

Vancomycin16

-0.905

0.0

Rv2680_day32

0.651

1.114

H37Rv_KO_MarP

0.26

-0.371

hypoxia_3wks

0.427

0.618

hypoxia_6wks

0.409

0.111

glycerol

0.922

0.101

cholesterol

0.184

0.429

AJ

0.424

0.657

Bibs02

0.465

0.612

Bibs02c

0.482

-0.036

BL6

-0.744

-0.619

BL6a

0.343

-0.63

BXD01

0.02

-0.141

BXD010

-0.035

-0.906

BXD011

-0.443

-1.085

BXD03

-0.339

-0.785

BXD04

-0.228

-1.318

BXD05

-0.461

-0.781

BXD06

0.218

-0.394

BXD07

-0.32

-0.44

BXD08

0.122

0.0

BXD09

-0.044

-0.858

CAST

0.035

0.936

CCcont

-0.829

-0.62

DS01

-0.32

-0.696

DS02

-0.432

0.109

DS04

-0.171

0.308

DS0c

-0.332

-0.64

GP01

0.309

-1.595

GP02

0.42

-1.111

GP0c

0.11

-0.608

NOD

0.207

-0.42

NZO

0.286

0.431

PWK

-0.061

0.607

H37Rv_KO_CtpC

-0.808

-0.992

H37Rv_KO_CtpD

0.374

-0.022

H37Rv_KO_Rv1272

-0.417

-0.818

H37Rv_KO_SugABC

0.034

0.319

H37Rv_KO_MbtN

0.175

-1.585

Trans05

0.804

0.437

macrophage_unactivated

0.164

-0.379

IL1

0.952

0.483

Rapamycin

0.669

-0.565

Tcell

0.205

-0.192

GMCSF

0.211

-0.85

IFNab

0.659

-0.46

IFNg

0.094

-0.238

IFNg_GMCSF1

0.748

-0.091

Rv1432_day32

0.0

-1.724

Rv1565c_day32

-0.039

-0.381

secA2_input

0.343

-0.523

delta_Rv3594

-0.093

-0.145

delta_Rv3717

-1.004

-0.877

delta_Rv3811

-0.711

-0.758

delta_Rv0954

-0.065

0.605

PonA1

-0.899

-0.862

EccD1_KO

-0.174

-0.141

EspI_KO

0.066

0.12

PE35_KO

-0.423

0.0

PPE68_KO

-0.422

-0.138

glycerol2

0.329

0.444

lignocerate

0.434

0.061

oleate

0.438

0.889

phosphatidylcholine

0.385

0.808

acetate

-0.455

0.042

glucAc

-0.189

-0.456

Rv0950ko

-0.238

-1.095

Rv1096ko

-0.67

-2.063

Rv3684ko

-0.465

-1.611

delta_otsA_trehalose

0.42

-1.89