TnSeqCorr

Top 10 genes with highest correlation to Rv2486/echA14:

update plotcorrelationlink to info on gene
Rv2313c/- (cc=0.4892) info on Rv2313c/-
Rv2010/vapC15 (cc=0.4217) info on Rv2010/vapC15
Rv0230c/php (cc=0.4197) info on Rv0230c/php
Rv1410c/- (cc=0.4053) info on Rv1410c/-
Rv2658c/- (cc=0.4016) info on Rv2658c/-
Rv3843c/- (cc=0.395) info on Rv3843c/-
Rv1730c/- (cc=0.3948) info on Rv1730c/-
Rv0015c/pknA (cc=0.3946) info on Rv0015c/pknA
Rv0194/- (cc=0.3919) info on Rv0194/-
Rv0160c/PE4 (cc=0.3912) info on Rv0160c/PE4

Correlation of Rv2486/echA14 with Rv0015c/pknA

Normalized LFCs for Rv2486/echA14:
(description and provenance of datasets)
Rv2486/echA14Rv0015c/pknA
Fe_supp_jason_reseq

0.979

0.0

low_pH_jason_reseq

-0.525

0.0

NO_jason_reseq

-0.105

-0.362

B6_jason_reseq

1.292

-0.153

MHCII_jason_reseq

0.524

0.77

Isoniazid02

-0.732

0.407

Rifampicin4

-0.818

-0.942

Ethambutol3

-0.789

-0.27

Meropenem3

-0.648

-0.417

Vancomycin16

-0.905

0.512

Rv2680_day32

0.651

0.0

H37Rv_KO_MarP

0.26

0.825

hypoxia_3wks

0.427

0.0

hypoxia_6wks

0.409

-0.288

glycerol

0.922

1.463

cholesterol

0.184

0.463

AJ

0.424

1.407

Bibs02

0.465

1.695

Bibs02c

0.482

0.668

BL6

-0.744

-0.439

BL6a

0.343

-0.154

BXD01

0.02

-0.328

BXD010

-0.035

-0.45

BXD011

-0.443

0.0

BXD03

-0.339

-0.105

BXD04

-0.228

-0.312

BXD05

-0.461

-0.473

BXD06

0.218

-0.469

BXD07

-0.32

0.517

BXD08

0.122

-0.467

BXD09

-0.044

-0.494

CAST

0.035

-0.179

CCcont

-0.829

-0.525

DS01

-0.32

-0.183

DS02

-0.432

-0.548

DS04

-0.171

-0.15

DS0c

-0.332

0.57

GP01

0.309

-0.347

GP02

0.42

-0.292

GP0c

0.11

-0.457

NOD

0.207

-0.361

NZO

0.286

2.339

PWK

-0.061

0.142

H37Rv_KO_CtpC

-0.808

-0.571

H37Rv_KO_CtpD

0.374

-0.445

H37Rv_KO_Rv1272

-0.417

-0.356

H37Rv_KO_SugABC

0.034

-0.348

H37Rv_KO_MbtN

0.175

-0.166

Trans05

0.804

-0.459

macrophage_unactivated

0.164

0.398

IL1

0.952

0.715

Rapamycin

0.669

0.0

Tcell

0.205

0.0

GMCSF

0.211

-0.364

IFNab

0.659

-0.417

IFNg

0.094

0.0

IFNg_GMCSF1

0.748

2.231

Rv1432_day32

0.0

-0.139

Rv1565c_day32

-0.039

0.0

secA2_input

0.343

-0.47

delta_Rv3594

-0.093

-2.022

delta_Rv3717

-1.004

-1.664

delta_Rv3811

-0.711

-1.31

delta_Rv0954

-0.065

-1.239

PonA1

-0.899

-1.928

EccD1_KO

-0.174

-1.003

EspI_KO

0.066

-0.2

PE35_KO

-0.423

-1.415

PPE68_KO

-0.422

-0.71

glycerol2

0.329

0.0

lignocerate

0.434

0.0

oleate

0.438

0.0

phosphatidylcholine

0.385

0.0

acetate

-0.455

0.0

glucAc

-0.189

0.0

Rv0950ko

-0.238

0.262

Rv1096ko

-0.67

0.748

Rv3684ko

-0.465

0.0

delta_otsA_trehalose

0.42

-0.854