Top 10 genes with highest correlation to Rv2475c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0485/- | (cc=0.7011) | info on Rv0485/- |
| Rv2047c/- | (cc=0.6678) | info on Rv2047c/- |
| Rv3868/eccA1 | (cc=0.61) | info on Rv3868/eccA1 |
| Rv1590/- | (cc=0.6089) | info on Rv1590/- |
| Rv3535c/hsaG | (cc=0.6058) | info on Rv3535c/hsaG |
| Rv1568/bioA | (cc=0.603) | info on Rv1568/bioA |
| Rv2942/mmpL7 | (cc=0.593) | info on Rv2942/mmpL7 |
| Rv2476c/gdh | (cc=0.5862) | info on Rv2476c/gdh |
| Rv3870/eccCa1 | (cc=0.5709) | info on Rv3870/eccCa1 |
| Rv3544c/fadE28 | (cc=0.5699) | info on Rv3544c/fadE28 |
Correlation of Rv2475c/- with Rv3535c/hsaG
Normalized LFCs for Rv2475c/-:
(description and provenance of datasets)
| Rv2475c/- | Rv3535c/hsaG | |
| Fe_supp_jason_reseq | -0.982 | -0.714 |
| low_pH_jason_reseq | 0.283 | -0.299 |
| NO_jason_reseq | -5.224 | -0.155 |
| B6_jason_reseq | -3.595 | -1.901 |
| MHCII_jason_reseq | -1.986 | -1.377 |
| Isoniazid02 | -0.611 | 0.869 |
| Rifampicin4 | -0.707 | -0.051 |
| Ethambutol3 | -1.53 | 1.612 |
| Meropenem3 | -2.11 | 0.313 |
| Vancomycin16 | -0.743 | -0.202 |
| Rv2680_day32 | -3.788 | -1.643 |
| H37Rv_KO_MarP | 0.442 | 0.198 |
| hypoxia_3wks | 0.335 | 0.132 |
| hypoxia_6wks | -0.382 | -0.198 |
| glycerol | -2.036 | -0.342 |
| cholesterol | -0.89 | -1.975 |
| AJ | -2.588 | -1.632 |
| Bibs02 | -0.715 | -1.017 |
| Bibs02c | -2.236 | -0.668 |
| BL6 | -0.885 | -0.999 |
| BL6a | -1.832 | -1.033 |
| BXD01 | -0.607 | -1.42 |
| BXD010 | -0.688 | -0.589 |
| BXD011 | -1.797 | -1.777 |
| BXD03 | -1.197 | -0.471 |
| BXD04 | 0.047 | -0.881 |
| BXD05 | -1.545 | -2.219 |
| BXD06 | -1.386 | -1.167 |
| BXD07 | -0.921 | -1.057 |
| BXD08 | -1.794 | -1.112 |
| BXD09 | -1.281 | -1.516 |
| CAST | -1.758 | -2.177 |
| CCcont | 0.752 | -0.138 |
| DS01 | -2.152 | -2.135 |
| DS02 | -1.763 | -0.009 |
| DS04 | -2.195 | -2.586 |
| DS0c | -2.065 | -2.264 |
| GP01 | -0.732 | -1.46 |
| GP02 | -1.911 | -0.506 |
| GP0c | -1.151 | -0.182 |
| NOD | -3.267 | -2.397 |
| NZO | -2.323 | -1.097 |
| PWK | -1.867 | -2.39 |
| H37Rv_KO_CtpC | -1.736 | -2.141 |
| H37Rv_KO_CtpD | -1.012 | -0.583 |
| H37Rv_KO_Rv1272 | -0.998 | -1.289 |
| H37Rv_KO_SugABC | -1.485 | 0.033 |
| H37Rv_KO_MbtN | 1.143 | -0.635 |
| Trans05 | -1.762 | -0.952 |
| macrophage_unactivated | 0.36 | 0.319 |
| IL1 | -0.489 | 0.664 |
| Rapamycin | 0.497 | 0.387 |
| Tcell | -0.733 | -0.45 |
| GMCSF | -1.927 | 0.018 |
| IFNab | 0.067 | -0.06 |
| IFNg | -2.403 | 0.446 |
| IFNg_GMCSF1 | -1.678 | -0.342 |
| Rv1432_day32 | -3.601 | -1.352 |
| Rv1565c_day32 | -1.148 | -2.06 |
| secA2_input | 1.331 | 1.296 |
| delta_Rv3594 | 0.054 | 0.125 |
| delta_Rv3717 | -0.497 | 0.216 |
| delta_Rv3811 | -0.345 | 0.393 |
| delta_Rv0954 | 0.176 | 0.358 |
| PonA1 | 1.432 | 0.391 |
| EccD1_KO | -0.151 | -0.911 |
| EspI_KO | 1.027 | -0.368 |
| PE35_KO | 0.683 | -0.053 |
| PPE68_KO | 0.918 | -0.134 |
| glycerol2 | 1.014 | 0.97 |
| lignocerate | 1.396 | 1.54 |
| oleate | -0.194 | -0.228 |
| phosphatidylcholine | 1.217 | 0.933 |
| acetate | 1.019 | 1.275 |
| glucAc | 0.892 | 1.344 |
| Rv0950ko | 0.799 | 0.66 |
| Rv1096ko | 0.872 | 0.624 |
| Rv3684ko | 1.32 | 1.13 |
| delta_otsA_trehalose | 0.871 | 0.54 |