Top 10 genes with highest correlation to Rv2475c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0485/- | (cc=0.7011) | info on Rv0485/- |
| Rv2047c/- | (cc=0.6678) | info on Rv2047c/- |
| Rv3868/eccA1 | (cc=0.61) | info on Rv3868/eccA1 |
| Rv1590/- | (cc=0.6089) | info on Rv1590/- |
| Rv3535c/hsaG | (cc=0.6058) | info on Rv3535c/hsaG |
| Rv1568/bioA | (cc=0.603) | info on Rv1568/bioA |
| Rv2942/mmpL7 | (cc=0.593) | info on Rv2942/mmpL7 |
| Rv2476c/gdh | (cc=0.5862) | info on Rv2476c/gdh |
| Rv3870/eccCa1 | (cc=0.5709) | info on Rv3870/eccCa1 |
| Rv3544c/fadE28 | (cc=0.5699) | info on Rv3544c/fadE28 |
Correlation of Rv2475c/- with Rv2476c/gdh
Normalized LFCs for Rv2475c/-:
(description and provenance of datasets)
| Rv2475c/- | Rv2476c/gdh | |
| Fe_supp_jason_reseq | -0.982 | 1.339 |
| low_pH_jason_reseq | 0.283 | -0.539 |
| NO_jason_reseq | -5.224 | -4.862 |
| B6_jason_reseq | -3.595 | -1.292 |
| MHCII_jason_reseq | -1.986 | -0.795 |
| Isoniazid02 | -0.611 | -1.483 |
| Rifampicin4 | -0.707 | -1.14 |
| Ethambutol3 | -1.53 | -2.234 |
| Meropenem3 | -2.11 | -2.9 |
| Vancomycin16 | -0.743 | -2.918 |
| Rv2680_day32 | -3.788 | -2.415 |
| H37Rv_KO_MarP | 0.442 | -0.216 |
| hypoxia_3wks | 0.335 | -0.638 |
| hypoxia_6wks | -0.382 | -1.301 |
| glycerol | -2.036 | -3.135 |
| cholesterol | -0.89 | -2.524 |
| AJ | -2.588 | -0.807 |
| Bibs02 | -0.715 | 0.585 |
| Bibs02c | -2.236 | 0.64 |
| BL6 | -0.885 | -0.882 |
| BL6a | -1.832 | 0.076 |
| BXD01 | -0.607 | -1.813 |
| BXD010 | -0.688 | -1.006 |
| BXD011 | -1.797 | -1.17 |
| BXD03 | -1.197 | -1.309 |
| BXD04 | 0.047 | -0.92 |
| BXD05 | -1.545 | -1.371 |
| BXD06 | -1.386 | -1.671 |
| BXD07 | -0.921 | -1.272 |
| BXD08 | -1.794 | -1.16 |
| BXD09 | -1.281 | -1.164 |
| CAST | -1.758 | -1.215 |
| CCcont | 0.752 | 1.275 |
| DS01 | -2.152 | -0.955 |
| DS02 | -1.763 | -0.476 |
| DS04 | -2.195 | -0.961 |
| DS0c | -2.065 | -0.086 |
| GP01 | -0.732 | -0.216 |
| GP02 | -1.911 | -0.312 |
| GP0c | -1.151 | -0.686 |
| NOD | -3.267 | -1.041 |
| NZO | -2.323 | -1.74 |
| PWK | -1.867 | -0.793 |
| H37Rv_KO_CtpC | -1.736 | -0.911 |
| H37Rv_KO_CtpD | -1.012 | 0.477 |
| H37Rv_KO_Rv1272 | -0.998 | -0.612 |
| H37Rv_KO_SugABC | -1.485 | -0.459 |
| H37Rv_KO_MbtN | 1.143 | -0.478 |
| Trans05 | -1.762 | -0.733 |
| macrophage_unactivated | 0.36 | 0.092 |
| IL1 | -0.489 | 0.635 |
| Rapamycin | 0.497 | 1.093 |
| Tcell | -0.733 | -0.71 |
| GMCSF | -1.927 | -0.945 |
| IFNab | 0.067 | 0.868 |
| IFNg | -2.403 | -1.058 |
| IFNg_GMCSF1 | -1.678 | -0.899 |
| Rv1432_day32 | -3.601 | -1.692 |
| Rv1565c_day32 | -1.148 | -1.726 |
| secA2_input | 1.331 | -2.091 |
| delta_Rv3594 | 0.054 | -0.769 |
| delta_Rv3717 | -0.497 | -1.891 |
| delta_Rv3811 | -0.345 | -1.193 |
| delta_Rv0954 | 0.176 | 0.326 |
| PonA1 | 1.432 | 1.676 |
| EccD1_KO | -0.151 | 0.171 |
| EspI_KO | 1.027 | 0.525 |
| PE35_KO | 0.683 | 0.802 |
| PPE68_KO | 0.918 | 0.928 |
| glycerol2 | 1.014 | 0.0 |
| lignocerate | 1.396 | 0.0 |
| oleate | -0.194 | 0.0 |
| phosphatidylcholine | 1.217 | 0.0 |
| acetate | 1.019 | 0.0 |
| glucAc | 0.892 | 0.0 |
| Rv0950ko | 0.799 | 0.404 |
| Rv1096ko | 0.872 | 0.911 |
| Rv3684ko | 1.32 | 0.354 |
| delta_otsA_trehalose | 0.871 | -0.343 |