TnSeqCorr

Top 10 genes with highest correlation to Rv2467/pepN:

update plotcorrelationlink to info on gene
Rv1287/- (cc=0.7005) info on Rv1287/-
Rv2733c/- (cc=0.6935) info on Rv2733c/-
Rv2140c/TB18.6 (cc=0.6873) info on Rv2140c/TB18.6
Rv1473/- (cc=0.6869) info on Rv1473/-
Rv0806c/cpsY (cc=0.6826) info on Rv0806c/cpsY
Rv2091c/- (cc=0.6447) info on Rv2091c/-
Rv1824/- (cc=0.6432) info on Rv1824/-
Rv1158c/- (cc=0.5902) info on Rv1158c/-
Rv2672/- (cc=0.5881) info on Rv2672/-
Rv0561c/- (cc=0.5835) info on Rv0561c/-

Correlation of Rv2467/pepN with Rv2091c/-

Normalized LFCs for Rv2467/pepN:
(description and provenance of datasets)
Rv2467/pepNRv2091c/-
Fe_supp_jason_reseq

3.498

1.432

low_pH_jason_reseq

0.831

-0.796

NO_jason_reseq

-1.016

-2.625

B6_jason_reseq

-0.311

-1.862

MHCII_jason_reseq

1.018

-0.892

Isoniazid02

-0.077

-0.109

Rifampicin4

-0.915

-3.106

Ethambutol3

0.18

0.674

Meropenem3

0.049

2.1

Vancomycin16

-0.17

-0.409

Rv2680_day32

-0.75

-2.156

H37Rv_KO_MarP

0.388

5.856

hypoxia_3wks

-1.017

-2.373

hypoxia_6wks

-1.432

-3.817

glycerol

1.006

0.05

cholesterol

1.421

-0.929

AJ

-0.482

-2.266

Bibs02

-0.55

-2.134

Bibs02c

0.674

-1.734

BL6

-1.549

-3.158

BL6a

0.218

-2.274

BXD01

-1.286

-3.592

BXD010

-1.363

-3.425

BXD011

-0.886

-2.647

BXD03

-0.487

-3.323

BXD04

-0.896

-3.41

BXD05

-1.38

-2.993

BXD06

-1.368

-3.57

BXD07

-0.888

-3.232

BXD08

-0.622

-3.268

BXD09

-1.614

-3.548

CAST

-1.602

-4.228

CCcont

0.399

-0.365

DS01

-1.389

-3.251

DS02

-1.843

-1.344

DS04

-1.844

-3.123

DS0c

-0.781

-4.062

GP01

-0.278

-2.813

GP02

-0.063

-2.453

GP0c

-1.437

-3.282

NOD

-1.266

-0.675

NZO

-1.075

-3.661

PWK

-1.662

-4.362

H37Rv_KO_CtpC

0.36

-0.397

H37Rv_KO_CtpD

-0.309

-2.003

H37Rv_KO_Rv1272

0.0

-2.399

H37Rv_KO_SugABC

-0.206

-1.783

H37Rv_KO_MbtN

-0.015

-1.127

Trans05

-1.558

-3.128

macrophage_unactivated

0.511

-0.066

IL1

0.481

0.184

Rapamycin

0.307

0.433

Tcell

0.821

-0.831

GMCSF

-0.38

1.151

IFNab

-0.671

0.762

IFNg

0.179

-0.294

IFNg_GMCSF1

0.0

-0.962

Rv1432_day32

0.687

-3.055

Rv1565c_day32

0.261

0.539

secA2_input

0.573

-1.277

delta_Rv3594

2.216

0.089

delta_Rv3717

0.784

-0.238

delta_Rv3811

1.785

-0.165

delta_Rv0954

0.364

-2.079

PonA1

0.044

0.054

EccD1_KO

0.99

-0.743

EspI_KO

1.095

0.165

PE35_KO

1.286

0.887

PPE68_KO

1.725

-0.032

glycerol2

-0.178

-0.085

lignocerate

-0.564

-1.023

oleate

-1.598

-4.004

phosphatidylcholine

-0.241

-0.098

acetate

0.46

0.0

glucAc

0.295

-0.52

Rv0950ko

0.103

-0.241

Rv1096ko

0.202

-1.089

Rv3684ko

1.159

-1.104

delta_otsA_trehalose

0.437

-0.19