TnSeqCorr

Top 10 genes with highest correlation to Rv2424c/-:

update plotcorrelationlink to info on gene
Rv1367c/- (cc=0.5961) info on Rv1367c/-
Rv3055/- (cc=0.5948) info on Rv3055/-
Rv2786c/ribF (cc=0.5633) info on Rv2786c/ribF
Rv2177c/- (cc=0.5495) info on Rv2177c/-
Rv1250/- (cc=0.5155) info on Rv1250/-
Rv2980/- (cc=0.5125) info on Rv2980/-
Rv0520/- (cc=0.5123) info on Rv0520/-
Rv2915c/- (cc=0.5113) info on Rv2915c/-
Rv0895/- (cc=0.5109) info on Rv0895/-
Rv1735c/- (cc=0.5061) info on Rv1735c/-

Correlation of Rv2424c/- with Rv2786c/ribF

Normalized LFCs for Rv2424c/-:
(description and provenance of datasets)
Rv2424c/-Rv2786c/ribF
Fe_supp_jason_reseq

-0.701

0.527

low_pH_jason_reseq

-1.082

-0.877

NO_jason_reseq

0.349

0.746

B6_jason_reseq

0.996

0.315

MHCII_jason_reseq

-0.668

-0.804

Isoniazid02

-0.18

0.247

Rifampicin4

0.875

0.46

Ethambutol3

0.573

0.392

Meropenem3

0.659

0.297

Vancomycin16

0.645

0.451

Rv2680_day32

0.043

0.0

H37Rv_KO_MarP

0.676

-0.481

hypoxia_3wks

-0.167

-0.427

hypoxia_6wks

0.121

-1.013

glycerol

-1.287

0.325

cholesterol

-0.457

-0.89

AJ

0.913

1.543

Bibs02

-0.148

-1.123

Bibs02c

0.196

-0.55

BL6

0.455

-0.643

BL6a

-0.29

-0.244

BXD01

-0.276

-0.8

BXD010

-0.559

-0.787

BXD011

-0.513

-0.076

BXD03

-0.213

-0.831

BXD04

0.063

-0.76

BXD05

-0.628

-0.827

BXD06

-0.469

-0.687

BXD07

-0.288

-0.851

BXD08

-0.209

-0.684

BXD09

-0.242

-0.477

CAST

0.295

1.86

CCcont

-1.203

-0.917

DS01

0.33

-0.802

DS02

0.775

2.133

DS04

0.864

-0.115

DS0c

0.412

0.239

GP01

0.121

0.561

GP02

0.333

0.578

GP0c

0.623

1.493

NOD

0.413

0.675

NZO

0.909

-0.845

PWK

0.645

1.584

H37Rv_KO_CtpC

-0.184

1.398

H37Rv_KO_CtpD

-0.777

-0.778

H37Rv_KO_Rv1272

-0.222

1.139

H37Rv_KO_SugABC

-0.344

-0.608

H37Rv_KO_MbtN

-1.569

-0.633

Trans05

1.084

0.908

macrophage_unactivated

-0.407

-0.761

IL1

-1.1

-0.715

Rapamycin

-0.93

-0.353

Tcell

-0.479

-0.785

GMCSF

0.098

-0.304

IFNab

-0.937

-0.348

IFNg

-0.69

-1.013

IFNg_GMCSF1

0.148

-0.361

Rv1432_day32

-0.03

0.0

Rv1565c_day32

0.215

0.182

secA2_input

0.941

1.288

delta_Rv3594

-0.72

-0.6

delta_Rv3717

-0.865

-1.016

delta_Rv3811

-0.769

-1.029

delta_Rv0954

-1.039

-1.383

PonA1

-0.256

-0.081

EccD1_KO

2.559

0.329

EspI_KO

1.657

0.55

PE35_KO

1.173

1.286

PPE68_KO

1.654

1.161

glycerol2

0.184

0.0

lignocerate

0.183

0.0

oleate

0.604

0.0

phosphatidylcholine

0.794

0.0

acetate

0.357

0.63

glucAc

-0.149

0.0

Rv0950ko

-0.069

-1.306

Rv1096ko

-0.187

-0.513

Rv3684ko

-0.334

-0.557

delta_otsA_trehalose

-0.098

0.373