Top 10 genes with highest correlation to Rv2409c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2411c/- | (cc=0.8344) | info on Rv2411c/- |
| Rv2410c/- | (cc=0.6507) | info on Rv2410c/- |
| Rv3058c/- | (cc=0.6023) | info on Rv3058c/- |
| Rv0757/phoP | (cc=0.5793) | info on Rv0757/phoP |
| Rv3616c/espA | (cc=0.5689) | info on Rv3616c/espA |
| Rv2613c/- | (cc=0.5508) | info on Rv2613c/- |
| Rv3614c/espD | (cc=0.5506) | info on Rv3614c/espD |
| Rv1038c/esxJ | (cc=0.535) | info on Rv1038c/esxJ |
| Rv2140c/TB18.6 | (cc=0.5107) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.5058) | info on Rv1819c/bacA |
Correlation of Rv2409c/- with Rv3058c/-
Normalized LFCs for Rv2409c/-:
(description and provenance of datasets)
| Rv2409c/- | Rv3058c/- | |
| Fe_supp_jason_reseq | 1.334 | -0.339 |
| low_pH_jason_reseq | -1.134 | -1.275 |
| NO_jason_reseq | -1.42 | -1.42 |
| B6_jason_reseq | 0.546 | -1.367 |
| MHCII_jason_reseq | 0.416 | -0.287 |
| Isoniazid02 | -2.007 | -2.551 |
| Rifampicin4 | -0.455 | -1.375 |
| Ethambutol3 | -0.563 | 1.008 |
| Meropenem3 | 0.128 | -0.89 |
| Vancomycin16 | -0.462 | -1.971 |
| Rv2680_day32 | -0.039 | -1.059 |
| H37Rv_KO_MarP | 1.03 | 2.314 |
| hypoxia_3wks | -0.686 | -0.367 |
| hypoxia_6wks | -0.612 | -0.134 |
| glycerol | 0.483 | -1.219 |
| cholesterol | 0.451 | -2.073 |
| AJ | -0.983 | 0.255 |
| Bibs02 | -1.805 | -1.526 |
| Bibs02c | -0.732 | -1.629 |
| BL6 | -1.081 | -2.223 |
| BL6a | -1.116 | -1.871 |
| BXD01 | -0.392 | -2.739 |
| BXD010 | -1.217 | -2.712 |
| BXD011 | -0.582 | -2.487 |
| BXD03 | -1.146 | -1.704 |
| BXD04 | -1.447 | -2.414 |
| BXD05 | -1.231 | -2.911 |
| BXD06 | -1.131 | -3.679 |
| BXD07 | -1.446 | -3.23 |
| BXD08 | -0.684 | -1.966 |
| BXD09 | -1.191 | -4.27 |
| CAST | -1.078 | 0.46 |
| CCcont | -0.407 | -0.791 |
| DS01 | -2.467 | -1.879 |
| DS02 | -3.088 | -2.874 |
| DS04 | -3.18 | -3.405 |
| DS0c | -1.479 | -2.72 |
| GP01 | -1.348 | -2.006 |
| GP02 | 0.041 | -2.73 |
| GP0c | -0.429 | -3.106 |
| NOD | 0.361 | 0.672 |
| NZO | -0.581 | -0.623 |
| PWK | -1.105 | 0.51 |
| H37Rv_KO_CtpC | 1.003 | -0.211 |
| H37Rv_KO_CtpD | -1.181 | -1.019 |
| H37Rv_KO_Rv1272 | 0.0 | -2.109 |
| H37Rv_KO_SugABC | -1.406 | -3.448 |
| H37Rv_KO_MbtN | -0.777 | -2.442 |
| Trans05 | -0.272 | -2.637 |
| macrophage_unactivated | 0.155 | -1.231 |
| IL1 | 1.385 | -1.744 |
| Rapamycin | 1.292 | -1.66 |
| Tcell | 0.43 | -0.873 |
| GMCSF | -0.066 | -1.164 |
| IFNab | -1.07 | -3.516 |
| IFNg | 1.0 | -1.625 |
| IFNg_GMCSF1 | -0.456 | -1.91 |
| Rv1432_day32 | -0.194 | -2.632 |
| Rv1565c_day32 | 0.611 | 0.069 |
| secA2_input | 2.143 | 0.609 |
| delta_Rv3594 | -0.22 | -1.138 |
| delta_Rv3717 | -0.688 | -2.022 |
| delta_Rv3811 | -0.29 | -1.553 |
| delta_Rv0954 | -0.23 | 0.774 |
| PonA1 | -0.286 | 2.176 |
| EccD1_KO | 0.089 | -0.398 |
| EspI_KO | 0.114 | -0.22 |
| PE35_KO | 0.557 | 0.831 |
| PPE68_KO | 0.65 | 0.666 |
| glycerol2 | 2.169 | 4.618 |
| lignocerate | 1.957 | 2.532 |
| oleate | 0.988 | 0.679 |
| phosphatidylcholine | 1.562 | 5.238 |
| acetate | 0.037 | 0.53 |
| glucAc | -0.272 | -0.159 |
| Rv0950ko | 0.211 | 0.362 |
| Rv1096ko | -0.112 | -0.09 |
| Rv3684ko | -0.72 | 0.282 |
| delta_otsA_trehalose | -1.072 | -0.217 |