Top 10 genes with highest correlation to Rv2409c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2411c/- | (cc=0.8344) | info on Rv2411c/- |
| Rv2410c/- | (cc=0.6507) | info on Rv2410c/- |
| Rv3058c/- | (cc=0.6023) | info on Rv3058c/- |
| Rv0757/phoP | (cc=0.5793) | info on Rv0757/phoP |
| Rv3616c/espA | (cc=0.5689) | info on Rv3616c/espA |
| Rv2613c/- | (cc=0.5508) | info on Rv2613c/- |
| Rv3614c/espD | (cc=0.5506) | info on Rv3614c/espD |
| Rv1038c/esxJ | (cc=0.535) | info on Rv1038c/esxJ |
| Rv2140c/TB18.6 | (cc=0.5107) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.5058) | info on Rv1819c/bacA |
Correlation of Rv2409c/- with Rv2410c/-
Normalized LFCs for Rv2409c/-:
(description and provenance of datasets)
| Rv2409c/- | Rv2410c/- | |
| Fe_supp_jason_reseq | 1.334 | 1.601 |
| low_pH_jason_reseq | -1.134 | -0.422 |
| NO_jason_reseq | -1.42 | -1.244 |
| B6_jason_reseq | 0.546 | 0.093 |
| MHCII_jason_reseq | 0.416 | -1.035 |
| Isoniazid02 | -2.007 | -1.087 |
| Rifampicin4 | -0.455 | -1.078 |
| Ethambutol3 | -0.563 | -0.129 |
| Meropenem3 | 0.128 | 2.311 |
| Vancomycin16 | -0.462 | 0.337 |
| Rv2680_day32 | -0.039 | -0.389 |
| H37Rv_KO_MarP | 1.03 | 1.435 |
| hypoxia_3wks | -0.686 | 0.06 |
| hypoxia_6wks | -0.612 | 0.0 |
| glycerol | 0.483 | -0.395 |
| cholesterol | 0.451 | -0.355 |
| AJ | -0.983 | -0.062 |
| Bibs02 | -1.805 | -1.118 |
| Bibs02c | -0.732 | -1.305 |
| BL6 | -1.081 | -1.732 |
| BL6a | -1.116 | -1.838 |
| BXD01 | -0.392 | -0.781 |
| BXD010 | -1.217 | -1.513 |
| BXD011 | -0.582 | -0.377 |
| BXD03 | -1.146 | -2.13 |
| BXD04 | -1.447 | -1.567 |
| BXD05 | -1.231 | -0.263 |
| BXD06 | -1.131 | -1.003 |
| BXD07 | -1.446 | -0.422 |
| BXD08 | -0.684 | -1.346 |
| BXD09 | -1.191 | -0.894 |
| CAST | -1.078 | -0.584 |
| CCcont | -0.407 | -1.86 |
| DS01 | -2.467 | -1.53 |
| DS02 | -3.088 | -2.483 |
| DS04 | -3.18 | -2.416 |
| DS0c | -1.479 | -2.013 |
| GP01 | -1.348 | -1.823 |
| GP02 | 0.041 | -0.671 |
| GP0c | -0.429 | -1.049 |
| NOD | 0.361 | -0.513 |
| NZO | -0.581 | -0.591 |
| PWK | -1.105 | 0.389 |
| H37Rv_KO_CtpC | 1.003 | 0.374 |
| H37Rv_KO_CtpD | -1.181 | 0.84 |
| H37Rv_KO_Rv1272 | 0.0 | -1.286 |
| H37Rv_KO_SugABC | -1.406 | 0.85 |
| H37Rv_KO_MbtN | -0.777 | -1.061 |
| Trans05 | -0.272 | 1.479 |
| macrophage_unactivated | 0.155 | 0.407 |
| IL1 | 1.385 | 0.593 |
| Rapamycin | 1.292 | -0.141 |
| Tcell | 0.43 | -0.111 |
| GMCSF | -0.066 | -0.409 |
| IFNab | -1.07 | -0.907 |
| IFNg | 1.0 | 0.454 |
| IFNg_GMCSF1 | -0.456 | 0.138 |
| Rv1432_day32 | -0.194 | 0.06 |
| Rv1565c_day32 | 0.611 | 0.39 |
| secA2_input | 2.143 | 0.055 |
| delta_Rv3594 | -0.22 | -0.22 |
| delta_Rv3717 | -0.688 | -1.24 |
| delta_Rv3811 | -0.29 | -0.164 |
| delta_Rv0954 | -0.23 | 0.222 |
| PonA1 | -0.286 | 0.548 |
| EccD1_KO | 0.089 | 0.467 |
| EspI_KO | 0.114 | 1.597 |
| PE35_KO | 0.557 | 0.753 |
| PPE68_KO | 0.65 | 1.021 |
| glycerol2 | 2.169 | 1.994 |
| lignocerate | 1.957 | 0.659 |
| oleate | 0.988 | 1.273 |
| phosphatidylcholine | 1.562 | 1.513 |
| acetate | 0.037 | -0.416 |
| glucAc | -0.272 | -1.034 |
| Rv0950ko | 0.211 | -0.621 |
| Rv1096ko | -0.112 | -0.739 |
| Rv3684ko | -0.72 | -0.383 |
| delta_otsA_trehalose | -1.072 | 0.586 |