Top 10 genes with highest correlation to Rv2409c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2411c/- | (cc=0.8344) | info on Rv2411c/- |
| Rv2410c/- | (cc=0.6507) | info on Rv2410c/- |
| Rv3058c/- | (cc=0.6023) | info on Rv3058c/- |
| Rv0757/phoP | (cc=0.5793) | info on Rv0757/phoP |
| Rv3616c/espA | (cc=0.5689) | info on Rv3616c/espA |
| Rv2613c/- | (cc=0.5508) | info on Rv2613c/- |
| Rv3614c/espD | (cc=0.5506) | info on Rv3614c/espD |
| Rv1038c/esxJ | (cc=0.535) | info on Rv1038c/esxJ |
| Rv2140c/TB18.6 | (cc=0.5107) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.5058) | info on Rv1819c/bacA |
Correlation of Rv2409c/- with Rv0757/phoP
Normalized LFCs for Rv2409c/-:
(description and provenance of datasets)
| Rv2409c/- | Rv0757/phoP | |
| Fe_supp_jason_reseq | 1.334 | 3.743 |
| low_pH_jason_reseq | -1.134 | 2.056 |
| NO_jason_reseq | -1.42 | -3.04 |
| B6_jason_reseq | 0.546 | -0.237 |
| MHCII_jason_reseq | 0.416 | -0.839 |
| Isoniazid02 | -2.007 | -2.642 |
| Rifampicin4 | -0.455 | -2.957 |
| Ethambutol3 | -0.563 | 0.242 |
| Meropenem3 | 0.128 | 0.513 |
| Vancomycin16 | -0.462 | -1.345 |
| Rv2680_day32 | -0.039 | 2.066 |
| H37Rv_KO_MarP | 1.03 | 3.807 |
| hypoxia_3wks | -0.686 | -2.628 |
| hypoxia_6wks | -0.612 | -2.76 |
| glycerol | 0.483 | -6.0 |
| cholesterol | 0.451 | -4.916 |
| AJ | -0.983 | -6.0 |
| Bibs02 | -1.805 | -4.225 |
| Bibs02c | -0.732 | -5.058 |
| BL6 | -1.081 | -4.37 |
| BL6a | -1.116 | -5.384 |
| BXD01 | -0.392 | -4.551 |
| BXD010 | -1.217 | -4.347 |
| BXD011 | -0.582 | -3.528 |
| BXD03 | -1.146 | -4.724 |
| BXD04 | -1.447 | -4.321 |
| BXD05 | -1.231 | -4.702 |
| BXD06 | -1.131 | -4.664 |
| BXD07 | -1.446 | -4.838 |
| BXD08 | -0.684 | -4.647 |
| BXD09 | -1.191 | -4.91 |
| CAST | -1.078 | -6.0 |
| CCcont | -0.407 | -0.89 |
| DS01 | -2.467 | -6.0 |
| DS02 | -3.088 | -5.026 |
| DS04 | -3.18 | -5.373 |
| DS0c | -1.479 | -4.737 |
| GP01 | -1.348 | -3.45 |
| GP02 | 0.041 | -2.907 |
| GP0c | -0.429 | -3.904 |
| NOD | 0.361 | -4.535 |
| NZO | -0.581 | -6.0 |
| PWK | -1.105 | -5.89 |
| H37Rv_KO_CtpC | 1.003 | -4.499 |
| H37Rv_KO_CtpD | -1.181 | -3.111 |
| H37Rv_KO_Rv1272 | 0.0 | -4.54 |
| H37Rv_KO_SugABC | -1.406 | -3.362 |
| H37Rv_KO_MbtN | -0.777 | -2.454 |
| Trans05 | -0.272 | -4.206 |
| macrophage_unactivated | 0.155 | -1.96 |
| IL1 | 1.385 | -1.842 |
| Rapamycin | 1.292 | -1.274 |
| Tcell | 0.43 | -1.678 |
| GMCSF | -0.066 | -2.64 |
| IFNab | -1.07 | -3.023 |
| IFNg | 1.0 | -2.673 |
| IFNg_GMCSF1 | -0.456 | -3.142 |
| Rv1432_day32 | -0.194 | 0.458 |
| Rv1565c_day32 | 0.611 | 1.579 |
| secA2_input | 2.143 | -0.238 |
| delta_Rv3594 | -0.22 | -6.0 |
| delta_Rv3717 | -0.688 | -5.163 |
| delta_Rv3811 | -0.29 | -6.0 |
| delta_Rv0954 | -0.23 | -1.579 |
| PonA1 | -0.286 | -0.548 |
| EccD1_KO | 0.089 | -1.174 |
| EspI_KO | 0.114 | -0.416 |
| PE35_KO | 0.557 | 2.173 |
| PPE68_KO | 0.65 | 1.507 |
| glycerol2 | 2.169 | 0.193 |
| lignocerate | 1.957 | 0.0 |
| oleate | 0.988 | 2.935 |
| phosphatidylcholine | 1.562 | 6.0 |
| acetate | 0.037 | 0.0 |
| glucAc | -0.272 | 0.272 |
| Rv0950ko | 0.211 | 0.299 |
| Rv1096ko | -0.112 | 0.0 |
| Rv3684ko | -0.72 | 0.164 |
| delta_otsA_trehalose | -1.072 | -2.245 |