Top 10 genes with highest correlation to Rv2409c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2411c/- | (cc=0.8344) | info on Rv2411c/- |
| Rv2410c/- | (cc=0.6507) | info on Rv2410c/- |
| Rv3058c/- | (cc=0.6023) | info on Rv3058c/- |
| Rv0757/phoP | (cc=0.5793) | info on Rv0757/phoP |
| Rv3616c/espA | (cc=0.5689) | info on Rv3616c/espA |
| Rv2613c/- | (cc=0.5508) | info on Rv2613c/- |
| Rv3614c/espD | (cc=0.5506) | info on Rv3614c/espD |
| Rv1038c/esxJ | (cc=0.535) | info on Rv1038c/esxJ |
| Rv2140c/TB18.6 | (cc=0.5107) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.5058) | info on Rv1819c/bacA |
Correlation of Rv2409c/- with Rv2613c/-
Normalized LFCs for Rv2409c/-:
(description and provenance of datasets)
| Rv2409c/- | Rv2613c/- | |
| Fe_supp_jason_reseq | 1.334 | 0.268 |
| low_pH_jason_reseq | -1.134 | -1.884 |
| NO_jason_reseq | -1.42 | -2.956 |
| B6_jason_reseq | 0.546 | -1.402 |
| MHCII_jason_reseq | 0.416 | -1.234 |
| Isoniazid02 | -2.007 | -2.196 |
| Rifampicin4 | -0.455 | 0.401 |
| Ethambutol3 | -0.563 | 1.093 |
| Meropenem3 | 0.128 | -0.61 |
| Vancomycin16 | -0.462 | 0.0 |
| Rv2680_day32 | -0.039 | -2.64 |
| H37Rv_KO_MarP | 1.03 | 2.047 |
| hypoxia_3wks | -0.686 | -3.102 |
| hypoxia_6wks | -0.612 | -2.637 |
| glycerol | 0.483 | -0.136 |
| cholesterol | 0.451 | -1.687 |
| AJ | -0.983 | -2.005 |
| Bibs02 | -1.805 | -2.905 |
| Bibs02c | -0.732 | -0.455 |
| BL6 | -1.081 | -2.084 |
| BL6a | -1.116 | -0.729 |
| BXD01 | -0.392 | -2.527 |
| BXD010 | -1.217 | -2.485 |
| BXD011 | -0.582 | -1.765 |
| BXD03 | -1.146 | -2.623 |
| BXD04 | -1.447 | -2.399 |
| BXD05 | -1.231 | -2.477 |
| BXD06 | -1.131 | -2.457 |
| BXD07 | -1.446 | -2.686 |
| BXD08 | -0.684 | -2.58 |
| BXD09 | -1.191 | -2.726 |
| CAST | -1.078 | -3.337 |
| CCcont | -0.407 | -0.355 |
| DS01 | -2.467 | -3.273 |
| DS02 | -3.088 | -3.297 |
| DS04 | -3.18 | -2.572 |
| DS0c | -1.479 | 0.919 |
| GP01 | -1.348 | -1.915 |
| GP02 | 0.041 | -1.614 |
| GP0c | -0.429 | -2.522 |
| NOD | 0.361 | -1.627 |
| NZO | -0.581 | -3.024 |
| PWK | -1.105 | -2.718 |
| H37Rv_KO_CtpC | 1.003 | -1.813 |
| H37Rv_KO_CtpD | -1.181 | -2.457 |
| H37Rv_KO_Rv1272 | 0.0 | -2.736 |
| H37Rv_KO_SugABC | -1.406 | -1.015 |
| H37Rv_KO_MbtN | -0.777 | -1.803 |
| Trans05 | -0.272 | -1.397 |
| macrophage_unactivated | 0.155 | 0.537 |
| IL1 | 1.385 | -2.011 |
| Rapamycin | 1.292 | -0.592 |
| Tcell | 0.43 | -0.629 |
| GMCSF | -0.066 | -0.792 |
| IFNab | -1.07 | -1.636 |
| IFNg | 1.0 | -1.812 |
| IFNg_GMCSF1 | -0.456 | -0.943 |
| Rv1432_day32 | -0.194 | 0.0 |
| Rv1565c_day32 | 0.611 | 2.003 |
| secA2_input | 2.143 | -0.751 |
| delta_Rv3594 | -0.22 | 1.059 |
| delta_Rv3717 | -0.688 | -0.668 |
| delta_Rv3811 | -0.29 | 0.0 |
| delta_Rv0954 | -0.23 | -0.398 |
| PonA1 | -0.286 | -1.592 |
| EccD1_KO | 0.089 | 1.924 |
| EspI_KO | 0.114 | 0.419 |
| PE35_KO | 0.557 | 0.939 |
| PPE68_KO | 0.65 | 1.286 |
| glycerol2 | 2.169 | 1.684 |
| lignocerate | 1.957 | 3.801 |
| oleate | 0.988 | 0.0 |
| phosphatidylcholine | 1.562 | 2.899 |
| acetate | 0.037 | 4.337 |
| glucAc | -0.272 | 3.342 |
| Rv0950ko | 0.211 | -1.013 |
| Rv1096ko | -0.112 | 0.16 |
| Rv3684ko | -0.72 | 0.891 |
| delta_otsA_trehalose | -1.072 | -1.204 |