Top 10 genes with highest correlation to Rv2409c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2411c/- | (cc=0.8344) | info on Rv2411c/- |
| Rv2410c/- | (cc=0.6507) | info on Rv2410c/- |
| Rv3058c/- | (cc=0.6023) | info on Rv3058c/- |
| Rv0757/phoP | (cc=0.5793) | info on Rv0757/phoP |
| Rv3616c/espA | (cc=0.5689) | info on Rv3616c/espA |
| Rv2613c/- | (cc=0.5508) | info on Rv2613c/- |
| Rv3614c/espD | (cc=0.5506) | info on Rv3614c/espD |
| Rv1038c/esxJ | (cc=0.535) | info on Rv1038c/esxJ |
| Rv2140c/TB18.6 | (cc=0.5107) | info on Rv2140c/TB18.6 |
| Rv1819c/bacA | (cc=0.5058) | info on Rv1819c/bacA |
Correlation of Rv2409c/- with Rv2411c/-
Normalized LFCs for Rv2409c/-:
(description and provenance of datasets)
| Rv2409c/- | Rv2411c/- | |
| Fe_supp_jason_reseq | 1.334 | 1.157 |
| low_pH_jason_reseq | -1.134 | -0.182 |
| NO_jason_reseq | -1.42 | -1.189 |
| B6_jason_reseq | 0.546 | -0.857 |
| MHCII_jason_reseq | 0.416 | -0.194 |
| Isoniazid02 | -2.007 | -1.096 |
| Rifampicin4 | -0.455 | -1.473 |
| Ethambutol3 | -0.563 | -0.058 |
| Meropenem3 | 0.128 | -0.489 |
| Vancomycin16 | -0.462 | -0.422 |
| Rv2680_day32 | -0.039 | -0.123 |
| H37Rv_KO_MarP | 1.03 | 1.51 |
| hypoxia_3wks | -0.686 | 0.072 |
| hypoxia_6wks | -0.612 | -0.215 |
| glycerol | 0.483 | 0.351 |
| cholesterol | 0.451 | 0.066 |
| AJ | -0.983 | -1.034 |
| Bibs02 | -1.805 | -1.518 |
| Bibs02c | -0.732 | -1.737 |
| BL6 | -1.081 | -0.572 |
| BL6a | -1.116 | -1.553 |
| BXD01 | -0.392 | -0.595 |
| BXD010 | -1.217 | -0.571 |
| BXD011 | -0.582 | -0.983 |
| BXD03 | -1.146 | -0.908 |
| BXD04 | -1.447 | -1.102 |
| BXD05 | -1.231 | -0.791 |
| BXD06 | -1.131 | -0.951 |
| BXD07 | -1.446 | -0.749 |
| BXD08 | -0.684 | -0.831 |
| BXD09 | -1.191 | -1.045 |
| CAST | -1.078 | -1.018 |
| CCcont | -0.407 | -0.558 |
| DS01 | -2.467 | -2.51 |
| DS02 | -3.088 | -2.787 |
| DS04 | -3.18 | -1.923 |
| DS0c | -1.479 | -2.054 |
| GP01 | -1.348 | -0.926 |
| GP02 | 0.041 | -0.968 |
| GP0c | -0.429 | -0.654 |
| NOD | 0.361 | -0.583 |
| NZO | -0.581 | -0.597 |
| PWK | -1.105 | -1.023 |
| H37Rv_KO_CtpC | 1.003 | -0.293 |
| H37Rv_KO_CtpD | -1.181 | -0.264 |
| H37Rv_KO_Rv1272 | 0.0 | -0.916 |
| H37Rv_KO_SugABC | -1.406 | 0.047 |
| H37Rv_KO_MbtN | -0.777 | -0.137 |
| Trans05 | -0.272 | -0.678 |
| macrophage_unactivated | 0.155 | -0.679 |
| IL1 | 1.385 | 1.308 |
| Rapamycin | 1.292 | 1.329 |
| Tcell | 0.43 | -0.042 |
| GMCSF | -0.066 | -0.702 |
| IFNab | -1.07 | -0.937 |
| IFNg | 1.0 | 0.404 |
| IFNg_GMCSF1 | -0.456 | 0.408 |
| Rv1432_day32 | -0.194 | 0.116 |
| Rv1565c_day32 | 0.611 | 0.31 |
| secA2_input | 2.143 | 1.158 |
| delta_Rv3594 | -0.22 | 0.243 |
| delta_Rv3717 | -0.688 | -0.427 |
| delta_Rv3811 | -0.29 | 0.101 |
| delta_Rv0954 | -0.23 | -0.264 |
| PonA1 | -0.286 | -0.23 |
| EccD1_KO | 0.089 | 0.072 |
| EspI_KO | 0.114 | 0.81 |
| PE35_KO | 0.557 | 0.324 |
| PPE68_KO | 0.65 | 0.211 |
| glycerol2 | 2.169 | 2.476 |
| lignocerate | 1.957 | 1.506 |
| oleate | 0.988 | 1.742 |
| phosphatidylcholine | 1.562 | 1.84 |
| acetate | 0.037 | -0.093 |
| glucAc | -0.272 | -0.648 |
| Rv0950ko | 0.211 | 0.398 |
| Rv1096ko | -0.112 | -0.38 |
| Rv3684ko | -0.72 | -0.288 |
| delta_otsA_trehalose | -1.072 | -0.422 |