Top 10 genes with highest correlation to Rv2407/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2701c/suhB | (cc=0.5303) | info on Rv2701c/suhB |
| Rv3089/fadD13 | (cc=0.4985) | info on Rv3089/fadD13 |
| Rv1737c/narK2 | (cc=0.4984) | info on Rv1737c/narK2 |
| Rv0447c/ufaA1 | (cc=0.4979) | info on Rv0447c/ufaA1 |
| Rv3585/radA | (cc=0.4947) | info on Rv3585/radA |
| Rv1226c/- | (cc=0.4935) | info on Rv1226c/- |
| Rv3265c/wbbL1 | (cc=0.4904) | info on Rv3265c/wbbL1 |
| Rv1001/arcA | (cc=0.4887) | info on Rv1001/arcA |
| Rv0969/ctpV | (cc=0.4782) | info on Rv0969/ctpV |
| Rv2370c/- | (cc=0.4723) | info on Rv2370c/- |
Correlation of Rv2407/- with Rv2370c/-
Normalized LFCs for Rv2407/-:
(description and provenance of datasets)
| Rv2407/- | Rv2370c/- | |
| Fe_supp_jason_reseq | -0.867 | -0.983 |
| low_pH_jason_reseq | -0.539 | -0.176 |
| NO_jason_reseq | 0.071 | 0.512 |
| B6_jason_reseq | -0.483 | -0.335 |
| MHCII_jason_reseq | 0.108 | -0.129 |
| Isoniazid02 | 0.54 | 0.54 |
| Rifampicin4 | 0.154 | 0.276 |
| Ethambutol3 | 1.069 | -0.085 |
| Meropenem3 | 0.627 | 0.276 |
| Vancomycin16 | 0.608 | 0.454 |
| Rv2680_day32 | 0.851 | 0.689 |
| H37Rv_KO_MarP | -0.535 | -0.205 |
| hypoxia_3wks | -0.152 | -0.455 |
| hypoxia_6wks | -0.04 | 0.081 |
| glycerol | -0.118 | -0.12 |
| cholesterol | -0.351 | -0.624 |
| AJ | -0.437 | -0.012 |
| Bibs02 | 0.427 | -0.526 |
| Bibs02c | -0.3 | -0.092 |
| BL6 | -0.334 | -0.87 |
| BL6a | -0.433 | -0.191 |
| BXD01 | -0.348 | -0.64 |
| BXD010 | 0.124 | 0.43 |
| BXD011 | -0.259 | -0.05 |
| BXD03 | -0.135 | -0.363 |
| BXD04 | -1.257 | -1.048 |
| BXD05 | 0.107 | 0.325 |
| BXD06 | -0.532 | -0.302 |
| BXD07 | -0.1 | 0.291 |
| BXD08 | 0.175 | -0.452 |
| BXD09 | 0.192 | -0.318 |
| CAST | 0.128 | -0.247 |
| CCcont | -0.424 | -0.904 |
| DS01 | -0.373 | -0.342 |
| DS02 | -0.249 | -0.544 |
| DS04 | 0.492 | 0.548 |
| DS0c | -0.526 | -0.327 |
| GP01 | 1.309 | 0.996 |
| GP02 | -0.195 | -0.842 |
| GP0c | 0.276 | -0.125 |
| NOD | 1.054 | -0.467 |
| NZO | 0.217 | -0.536 |
| PWK | 0.098 | -0.107 |
| H37Rv_KO_CtpC | -0.14 | 0.0 |
| H37Rv_KO_CtpD | 0.537 | 0.631 |
| H37Rv_KO_Rv1272 | -0.037 | 0.149 |
| H37Rv_KO_SugABC | 0.897 | 0.2 |
| H37Rv_KO_MbtN | -0.125 | 0.118 |
| Trans05 | 0.414 | -0.126 |
| macrophage_unactivated | -0.716 | 0.0 |
| IL1 | -0.353 | 0.267 |
| Rapamycin | -0.15 | 0.433 |
| Tcell | -0.189 | -0.091 |
| GMCSF | -0.428 | 0.304 |
| IFNab | -0.423 | 0.375 |
| IFNg | 0.174 | 0.802 |
| IFNg_GMCSF1 | 0.456 | 0.892 |
| Rv1432_day32 | 0.623 | -0.541 |
| Rv1565c_day32 | 0.33 | 0.512 |
| secA2_input | 1.647 | 0.44 |
| delta_Rv3594 | -0.168 | -0.289 |
| delta_Rv3717 | 0.011 | 0.174 |
| delta_Rv3811 | -0.294 | 0.036 |
| delta_Rv0954 | -0.093 | 0.216 |
| PonA1 | -0.361 | -0.351 |
| EccD1_KO | 1.375 | -0.059 |
| EspI_KO | 1.124 | 0.171 |
| PE35_KO | 0.493 | 0.271 |
| PPE68_KO | 0.541 | 0.298 |
| glycerol2 | -0.105 | -0.247 |
| lignocerate | -0.012 | 0.286 |
| oleate | 0.238 | -0.631 |
| phosphatidylcholine | 0.099 | -0.111 |
| acetate | 0.151 | 0.185 |
| glucAc | 0.144 | 0.126 |
| Rv0950ko | 0.85 | 0.522 |
| Rv1096ko | 0.787 | 0.793 |
| Rv3684ko | 0.717 | 0.413 |
| delta_otsA_trehalose | 1.7 | -0.1 |