Top 10 genes with highest correlation to Rv2407/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2701c/suhB | (cc=0.5303) | info on Rv2701c/suhB |
| Rv3089/fadD13 | (cc=0.4985) | info on Rv3089/fadD13 |
| Rv1737c/narK2 | (cc=0.4984) | info on Rv1737c/narK2 |
| Rv0447c/ufaA1 | (cc=0.4979) | info on Rv0447c/ufaA1 |
| Rv3585/radA | (cc=0.4947) | info on Rv3585/radA |
| Rv1226c/- | (cc=0.4935) | info on Rv1226c/- |
| Rv3265c/wbbL1 | (cc=0.4904) | info on Rv3265c/wbbL1 |
| Rv1001/arcA | (cc=0.4887) | info on Rv1001/arcA |
| Rv0969/ctpV | (cc=0.4782) | info on Rv0969/ctpV |
| Rv2370c/- | (cc=0.4723) | info on Rv2370c/- |
Correlation of Rv2407/- with Rv1001/arcA
Normalized LFCs for Rv2407/-:
(description and provenance of datasets)
| Rv2407/- | Rv1001/arcA | |
| Fe_supp_jason_reseq | -0.867 | -1.085 |
| low_pH_jason_reseq | -0.539 | -0.228 |
| NO_jason_reseq | 0.071 | -0.638 |
| B6_jason_reseq | -0.483 | -0.595 |
| MHCII_jason_reseq | 0.108 | -0.084 |
| Isoniazid02 | 0.54 | -0.146 |
| Rifampicin4 | 0.154 | -0.347 |
| Ethambutol3 | 1.069 | -0.097 |
| Meropenem3 | 0.627 | 0.921 |
| Vancomycin16 | 0.608 | 0.329 |
| Rv2680_day32 | 0.851 | -0.112 |
| H37Rv_KO_MarP | -0.535 | 0.152 |
| hypoxia_3wks | -0.152 | -0.215 |
| hypoxia_6wks | -0.04 | -0.418 |
| glycerol | -0.118 | 0.348 |
| cholesterol | -0.351 | -0.47 |
| AJ | -0.437 | 0.43 |
| Bibs02 | 0.427 | 0.593 |
| Bibs02c | -0.3 | 0.011 |
| BL6 | -0.334 | -0.266 |
| BL6a | -0.433 | -0.362 |
| BXD01 | -0.348 | -0.736 |
| BXD010 | 0.124 | -0.364 |
| BXD011 | -0.259 | -0.165 |
| BXD03 | -0.135 | -0.007 |
| BXD04 | -1.257 | -0.098 |
| BXD05 | 0.107 | -0.221 |
| BXD06 | -0.532 | -0.461 |
| BXD07 | -0.1 | -0.236 |
| BXD08 | 0.175 | -0.608 |
| BXD09 | 0.192 | -0.417 |
| CAST | 0.128 | -0.058 |
| CCcont | -0.424 | -0.194 |
| DS01 | -0.373 | 0.315 |
| DS02 | -0.249 | 0.2 |
| DS04 | 0.492 | 0.039 |
| DS0c | -0.526 | -0.207 |
| GP01 | 1.309 | 0.493 |
| GP02 | -0.195 | -0.142 |
| GP0c | 0.276 | 0.247 |
| NOD | 1.054 | -0.493 |
| NZO | 0.217 | 0.04 |
| PWK | 0.098 | 0.593 |
| H37Rv_KO_CtpC | -0.14 | -0.451 |
| H37Rv_KO_CtpD | 0.537 | -0.121 |
| H37Rv_KO_Rv1272 | -0.037 | -0.158 |
| H37Rv_KO_SugABC | 0.897 | 0.89 |
| H37Rv_KO_MbtN | -0.125 | 0.205 |
| Trans05 | 0.414 | 0.728 |
| macrophage_unactivated | -0.716 | -0.581 |
| IL1 | -0.353 | 0.19 |
| Rapamycin | -0.15 | 0.175 |
| Tcell | -0.189 | 0.134 |
| GMCSF | -0.428 | 0.066 |
| IFNab | -0.423 | -0.23 |
| IFNg | 0.174 | -0.492 |
| IFNg_GMCSF1 | 0.456 | 0.374 |
| Rv1432_day32 | 0.623 | 1.235 |
| Rv1565c_day32 | 0.33 | -0.025 |
| secA2_input | 1.647 | 0.277 |
| delta_Rv3594 | -0.168 | 0.153 |
| delta_Rv3717 | 0.011 | -0.122 |
| delta_Rv3811 | -0.294 | -0.028 |
| delta_Rv0954 | -0.093 | 0.43 |
| PonA1 | -0.361 | -0.591 |
| EccD1_KO | 1.375 | 0.0 |
| EspI_KO | 1.124 | 0.605 |
| PE35_KO | 0.493 | 0.248 |
| PPE68_KO | 0.541 | 0.605 |
| glycerol2 | -0.105 | -0.053 |
| lignocerate | -0.012 | 0.459 |
| oleate | 0.238 | 0.0 |
| phosphatidylcholine | 0.099 | -0.204 |
| acetate | 0.151 | 1.042 |
| glucAc | 0.144 | 0.706 |
| Rv0950ko | 0.85 | 0.516 |
| Rv1096ko | 0.787 | 0.467 |
| Rv3684ko | 0.717 | 0.426 |
| delta_otsA_trehalose | 1.7 | 1.169 |