TnSeqCorr

Top 10 genes with highest correlation to Rv2407/-:

update plotcorrelationlink to info on gene
Rv2701c/suhB (cc=0.5303) info on Rv2701c/suhB
Rv3089/fadD13 (cc=0.4985) info on Rv3089/fadD13
Rv1737c/narK2 (cc=0.4984) info on Rv1737c/narK2
Rv0447c/ufaA1 (cc=0.4979) info on Rv0447c/ufaA1
Rv3585/radA (cc=0.4947) info on Rv3585/radA
Rv1226c/- (cc=0.4935) info on Rv1226c/-
Rv3265c/wbbL1 (cc=0.4904) info on Rv3265c/wbbL1
Rv1001/arcA (cc=0.4887) info on Rv1001/arcA
Rv0969/ctpV (cc=0.4782) info on Rv0969/ctpV
Rv2370c/- (cc=0.4723) info on Rv2370c/-

Correlation of Rv2407/- with Rv0447c/ufaA1

Normalized LFCs for Rv2407/-:
(description and provenance of datasets)
Rv2407/-Rv0447c/ufaA1
Fe_supp_jason_reseq

-0.867

-0.09

low_pH_jason_reseq

-0.539

-0.622

NO_jason_reseq

0.071

0.0

B6_jason_reseq

-0.483

0.083

MHCII_jason_reseq

0.108

0.768

Isoniazid02

0.54

-0.291

Rifampicin4

0.154

-0.089

Ethambutol3

1.069

0.964

Meropenem3

0.627

0.211

Vancomycin16

0.608

0.0

Rv2680_day32

0.851

0.409

H37Rv_KO_MarP

-0.535

-0.104

hypoxia_3wks

-0.152

-0.179

hypoxia_6wks

-0.04

-0.19

glycerol

-0.118

-0.161

cholesterol

-0.351

-0.147

AJ

-0.437

-0.439

Bibs02

0.427

0.012

Bibs02c

-0.3

-0.182

BL6

-0.334

-0.623

BL6a

-0.433

-0.455

BXD01

-0.348

-0.86

BXD010

0.124

-0.354

BXD011

-0.259

-0.523

BXD03

-0.135

-1.102

BXD04

-1.257

0.169

BXD05

0.107

-0.475

BXD06

-0.532

-0.73

BXD07

-0.1

-0.425

BXD08

0.175

-0.345

BXD09

0.192

0.113

CAST

0.128

0.038

CCcont

-0.424

-0.843

DS01

-0.373

0.181

DS02

-0.249

0.323

DS04

0.492

0.26

DS0c

-0.526

0.014

GP01

1.309

-0.406

GP02

-0.195

-0.157

GP0c

0.276

-0.842

NOD

1.054

1.05

NZO

0.217

-0.238

PWK

0.098

0.09

H37Rv_KO_CtpC

-0.14

-0.499

H37Rv_KO_CtpD

0.537

-0.128

H37Rv_KO_Rv1272

-0.037

-0.36

H37Rv_KO_SugABC

0.897

-0.22

H37Rv_KO_MbtN

-0.125

-0.855

Trans05

0.414

-0.191

macrophage_unactivated

-0.716

-0.114

IL1

-0.353

-0.125

Rapamycin

-0.15

0.331

Tcell

-0.189

-0.684

GMCSF

-0.428

-0.243

IFNab

-0.423

-0.109

IFNg

0.174

-0.128

IFNg_GMCSF1

0.456

0.236

Rv1432_day32

0.623

0.94

Rv1565c_day32

0.33

-0.216

secA2_input

1.647

0.243

delta_Rv3594

-0.168

-0.369

delta_Rv3717

0.011

-0.332

delta_Rv3811

-0.294

-0.079

delta_Rv0954

-0.093

0.025

PonA1

-0.361

0.158

EccD1_KO

1.375

0.533

EspI_KO

1.124

0.659

PE35_KO

0.493

-0.298

PPE68_KO

0.541

0.106

glycerol2

-0.105

-0.092

lignocerate

-0.012

-0.08

oleate

0.238

0.319

phosphatidylcholine

0.099

-0.113

acetate

0.151

-0.012

glucAc

0.144

-0.436

Rv0950ko

0.85

0.742

Rv1096ko

0.787

0.992

Rv3684ko

0.717

0.897

delta_otsA_trehalose

1.7

0.461